RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CCZ1BP86790 482 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 CCZ1P86791 482 aaPredicted RBP15.78■□□□□ 0.12
CLN3-211ENST00000564091 HYAL2Q12891 473 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 HECTD2Q5U5R9 776 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 QSOX2Q6ZRP7 698 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 ABHD13Q7L211 337 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 STRA8Q7Z7C7 330 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 CEP97Q8IW35 865 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 CNTN4Q8IWV2 1026 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 TBC1D19Q8N5T2 526 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 ANKRD53Q8N9V6 530 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 NFAM1Q8NET5 270 aaPredicted RBP15.78■□□□□ 0.12
CLN3-211ENST00000564091 OLFM1Q99784 485 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 TRIM54Q9BYV2 358 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 TRIM45Q9H8W5 580 aaPredicted RBP15.78■□□□□ 0.12
CLN3-211ENST00000564091 PLAC1Q9HBJ0 212 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 PPANQ9NQ55 473 aaKnown RBP15.78■□□□□ 0.12
CLN3-211ENST00000564091 HIVEP1P15822 2718 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 SAGE2PA6NJ88 616 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 PGRMC1O00264 195 aaKnown RBP15.77■□□□□ 0.12
CLN3-211ENST00000564091 PRRG2O14669 202 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 TTC4O95801 387 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 SSTR2P30874 369 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 TRHRP34981 398 aaPredicted RBP15.77■□□□□ 0.12
CLN3-211ENST00000564091 HLCSP50747 726 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 REEP5Q00765 189 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 RBBP5Q15291 538 aaKnown RBP15.77■□□□□ 0.12
CLN3-211ENST00000564091 PPP1R7Q15435 360 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 BBS9Q3SYG4 887 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 SPANXN3Q5MJ09 141 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 HP1BP3Q5SSJ5 553 aaPredicted RBP15.77■□□□□ 0.12
CLN3-211ENST00000564091 TEDDM1Q5T9Z0 273 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 NIPAL1Q6NVV3 410 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 KIAA0408Q6ZU52 694 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 SULF2Q8IWU5 870 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 GABPB2Q8TAK5 448 aaPredicted RBP15.77■□□□□ 0.12
CLN3-211ENST00000564091 ATL1Q8WXF7 558 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 TMEM125Q96AQ2 219 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 SDCCAG3Q96C92 435 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 CERS2Q96G23 380 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 DMRTA2Q96SC8 542 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 NAP1L3Q99457 506 aaPredicted RBP15.77■□□□□ 0.12
CLN3-211ENST00000564091 DEFB126Q9BYW3 111 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 SLC6A16Q9GZN6 736 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 ZFATQ9P243 1243 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 PPT2Q9UMR5 302 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 VWA7Q9Y334 891 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 JRKLQ9Y4A0 524 aa15.77■□□□□ 0.12
CLN3-211ENST00000564091 C2CD3Q4AC94 2353 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 IGKV3D-11A0A0A0MRZ8 115 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 TCRBV16S1A1N1A0A5B0 115 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 C4orf51C9J302 202 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 E9PLN8 166 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 PSMD12O00232 456 aaPredicted RBP15.76■□□□□ 0.11
CLN3-211ENST00000564091 SMIM10L1P0DMW3 83 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 AHRP35869 848 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 FNTAP49354 379 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 MEOX1P50221 254 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 NXPE4Q6UWF7 544 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 TMPRSS11BQ86T26 416 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 THOC6Q86W42 341 aaKnown RBP15.76■□□□□ 0.11
CLN3-211ENST00000564091 CA13Q8N1Q1 262 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 GRK7Q8WTQ7 553 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 PHF10Q8WUB8 498 aaKnown RBP15.76■□□□□ 0.11
CLN3-211ENST00000564091 SMIM10Q96HG1 83 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 PWWP2AQ96N64 755 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 SPOCK3Q9BQ16 436 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 VKORC1Q9BQB6 163 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 AICDAQ9GZX7 198 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 PRDM9Q9NQV7 894 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 ASIC3Q9UHC3 531 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 SLC22A14Q9Y267 594 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 DYRK1BQ9Y463 629 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 HRH3Q9Y5N1 445 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 CPAMD8Q8IZJ3 1885 aa15.76■□□□□ 0.11
CLN3-211ENST00000564091 TRBV11-1A0A0K0K1C0 115 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 A0A1B0GTH9 108 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 CDK2AP1O14519 115 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 DNALI1O14645 258 aaPredicted RBP15.75■□□□□ 0.11
CLN3-211ENST00000564091 TFECO14948 347 aaPredicted RBP15.75■□□□□ 0.11
CLN3-211ENST00000564091 PEX1O43933 1283 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 HS6ST1O60243 411 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 RNH1P13489 461 aaKnown RBP15.75■□□□□ 0.11
CLN3-211ENST00000564091 PTGS2P35354 604 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 TOR1AIP1Q5JTV8 583 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 TRMT10BQ6PF06 316 aaKnown RBP15.75■□□□□ 0.11
CLN3-211ENST00000564091 SBSNQ6UWP8 590 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 APCDD1LQ8NCL9 501 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 ARMC2Q8NEN0 867 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 TRPV3Q8NET8 790 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 CREB3L4Q8TEY5 395 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 CA5BP1Q8WTZ4 195 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 CFAP36Q96G28 342 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 AIF1LQ9BQI0 150 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 PELI2Q9HAT8 420 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 CLK4Q9HAZ1 481 aaKnown RBP15.75■□□□□ 0.11
CLN3-211ENST00000564091 FBXW2Q9UKT8 454 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 MTORP42345 2549 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 SCN3AQ9NY46 2000 aa15.75■□□□□ 0.11
CLN3-211ENST00000564091 URADA6NGE7 173 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms