RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 MAPK9P45984 424 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 XKR6Q5GH73 641 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 MEDAGQ5VYS4 303 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 PLAG1Q6DJT9 500 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 Q6ZPB1 254 aaPredicted RBP15.65■□□□□ 0.1
SHMT2-232ENST00000557487 ATCAYQ86WG3 371 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 FAM217AQ8IXS0 508 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 OXR1Q8N573 874 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 C1orf52Q8N6N3 182 aaKnown RBP15.65■□□□□ 0.1
SHMT2-232ENST00000557487 B3GNT7Q8NFL0 401 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 LILRB4Q8NHJ6 448 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 UTP15Q8TED0 518 aaKnown RBP15.65■□□□□ 0.1
SHMT2-232ENST00000557487 WDFY2Q96P53 400 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 PIP5K1AQ99755 562 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 P2RY13Q9BPV8 354 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 MRPL9Q9BYD2 267 aaKnown RBP15.65■□□□□ 0.1
SHMT2-232ENST00000557487 RNF38Q9H0F5 515 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 AMBNQ9NP70 447 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 QPCTLQ9NXS2 382 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 A0A1W2PQ67 120 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 SLC35F4A4IF30 521 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 MGAT4DA6NG13 374 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 NPIPB15A6NHN6 443 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 K7ERQ8 282 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 YY2O15391 372 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 AP2A2O94973 939 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 CCNB2O95067 398 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 C1QCP02747 245 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 ANXA4P09525 319 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 HLA-EP13747 358 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 ITPKAP23677 461 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 CHMP24386 653 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 RPS5P46782 204 aaKnown RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 LIMS1P48059 325 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 NUDT6P53370 316 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 CDH12P55289 794 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 DMC1Q14565 340 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 ZNF630Q2M218 657 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 EXOC3L2Q2M3D2 409 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 ATP13A5Q4VNC0 1218 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 CRB2Q5IJ48 1285 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 LRRC66Q68CR7 880 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 TRIM40Q6P9F5 258 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 NAGSQ8N159 534 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 OR4A15Q8NGL6 344 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 OR6K2Q8NGY2 324 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 MCCC1Q96RQ3 725 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 SDHCQ99643 169 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 SMURF1Q9HCE7 757 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 ASAH2Q9NR71 780 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 A0A1W2PQ45 241 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 A0A1W2PQY0 241 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 ZAR1LA6NP61 321 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 SCG5P05408 212 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 GSTM1P09488 218 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 HSMCR30P0CW71 290 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 ATP1B2P14415 290 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 RCVRNP35243 200 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 XCR1P46094 333 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 GAB1Q13480 694 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 TAF12Q16514 161 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 CLPPQ16740 277 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 TSTQ16762 297 aaKnown RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 RNLSQ5VYX0 342 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 SLC39A5Q6ZMH5 540 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 THOC6Q86W42 341 aaKnown RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 RAB43Q86YS6 212 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 CLIP4Q8N3C7 705 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 OR2AP1Q8NGE2 309 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 WBP2Q969T9 261 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 REPS1Q96D71 796 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 ECHDC3Q96DC8 303 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 NIPSNAP1Q9BPW8 284 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 ABCB8Q9NUT2 735 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 TMEM184CQ9NVA4 438 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 SEC14L4Q9UDX3 406 aa15.64■□□□□ 0.09
SHMT2-232ENST00000557487 CFAP20Q9Y6A4 193 aaKnown RBP15.64■□□□□ 0.09
SHMT2-232ENST00000557487 PIKFYVEQ9Y2I7 2098 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 QSOX1O00391 747 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 SMAD6O43541 496 aaKnown RBP15.63■□□□□ 0.09
SHMT2-232ENST00000557487 GALTP07902 379 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 RHCEP18577 417 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 CBLP22681 906 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 TIA1P31483 386 aaKnown RBP eCLIP15.63■□□□□ 0.093e-16■■■□□ 15.8
SHMT2-232ENST00000557487 SNRPD1P62314 119 aaKnown RBP15.63■□□□□ 0.09
SHMT2-232ENST00000557487 SMAD3P84022 425 aaKnown RBP15.63■□□□□ 0.09
SHMT2-232ENST00000557487 GPR50Q13585 617 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 SCARB2Q14108 478 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 DOC2AQ14183 400 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 CARTPTQ16568 116 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 LRRC26Q2I0M4 334 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 PRSS55Q6UWB4 352 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-232ENST00000557487 TSPAN33Q86UF1 283 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 CELF2-AS1Q8N7Q2 184 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 SIMC1Q8NDZ2 872 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 FAM46DQ8NEK8 389 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 CDC26Q8NHZ8 85 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 ASZ1Q8WWH4 475 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 RASSF5Q8WWW0 418 aa15.63■□□□□ 0.09
SHMT2-232ENST00000557487 TP53INP1Q96A56 240 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms