RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 TPSAB1Q15661 275 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 ANKRD20A4Q4UJ75 823 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 FCRLBQ6BAA4 426 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 KIAA0930Q6ICG6 404 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 LRRC8BQ6P9F7 803 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 TMEM205Q6UW68 189 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 SDCCAG8Q86SQ7 713 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 PRUNE1Q86TP1 453 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 SPPL2CQ8IUH8 684 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 CSNK1A1LQ8N752 337 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 AGAP11Q8TF27 550 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 CA5BP1Q8WTZ4 195 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 SKA2Q8WVK7 121 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 ISL2Q96A47 359 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 SPOCK3Q9BQ16 436 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 YIPF2Q9BWQ6 316 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 TSGA10Q9BZW7 698 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 ZNF700Q9H0M5 742 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 SYNPO2LQ9H987 977 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 MKKSQ9NPJ1 570 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 FAM114A2Q9NRY5 505 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 RIC8BQ9NVN3 520 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 UTP6Q9NYH9 597 aaKnown RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 CGGBP1Q9UFW8 167 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 NPIPA1Q9UND3 350 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 RUVBL1Q9Y265 456 aaKnown RBP9.45□□□□□ -0.9
SCFD1-220ENST00000556486 VPS13CQ709C8 3753 aa9.45□□□□□ -0.9
SCFD1-220ENST00000556486 HCFC1P51610 2035 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 ZNF839A8K0R7 811 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 A8MUI8 341 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 E7ENX8 843 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 FOXS1O43638 330 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 PRAMEF2O60811 474 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 NIPSNAP2O75323 286 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 CCNDBP1O95273 360 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 VAPBO95292 243 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 SLC16A8O95907 504 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 CATP04040 527 aaKnown RBP9.44□□□□□ -0.9
SCFD1-220ENST00000556486 EIF2S1P05198 315 aaKnown RBP9.44□□□□□ -0.9
SCFD1-220ENST00000556486 ERVK-10P10266 1014 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 AGAP20933 346 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 CXCR2P25025 360 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 SKIV2L2P42285 1042 aaKnown RBP9.44□□□□□ -0.9
SCFD1-220ENST00000556486 CLCN7P51798 805 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 EMP2P54851 167 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 GFRA1P56159 465 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 RNF4P78317 190 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 ABATP80404 500 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 TAP2Q03519 686 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 MAP4K2Q12851 820 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 SNX1Q13596 522 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 ZNF766Q5HY98 468 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 ICE2Q659A1 982 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 GTF2IRD2BQ6EKJ0 949 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 C1orf229Q6ZS94 237 aaPredicted RBP9.44□□□□□ -0.9
SCFD1-220ENST00000556486 CHSY3Q70JA7 882 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 UBE2R2Q712K3 238 aaPredicted RBP9.44□□□□□ -0.9
SCFD1-220ENST00000556486 PCGF5Q86SE9 256 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 GTF2IRD2Q86UP8 949 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 TGIF2LYQ8IUE0 185 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 CILP2Q8IUL8 1156 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 LRRC56Q8IYG6 542 aaPredicted RBP9.44□□□□□ -0.9
SCFD1-220ENST00000556486 DNAJB8Q8NHS0 232 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 SUN3Q8TAQ9 357 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 CABS1Q96KC9 395 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 IMMP1LQ96LU5 166 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 SMR3AQ99954 134 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 YIPF4Q9BSR8 244 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 DRC3Q9H069 523 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 ENKD1Q9H0I2 346 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 LIME1Q9H400 295 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 MRPS30Q9NP92 439 aaKnown RBP9.44□□□□□ -0.9
SCFD1-220ENST00000556486 CCM2LQ9NUG4 571 aaPredicted RBP9.44□□□□□ -0.9
SCFD1-220ENST00000556486 INTS10Q9NVR2 710 aaKnown RBP9.44□□□□□ -0.9
SCFD1-220ENST00000556486 TRPC4Q9UBN4 977 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 MED16Q9Y2X0 877 aa9.44□□□□□ -0.9
SCFD1-220ENST00000556486 HRNRQ86YZ3 2850 aaPredicted RBP9.43□□□□□ -0.9
SCFD1-220ENST00000556486 FLNAP21333 2647 aaKnown RBP9.43□□□□□ -0.9
SCFD1-220ENST00000556486 KCNE1BA0A087WTH5 132 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 IGHV3-20A0A0C4DH32 117 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 TCRBV16S1A1N1A0A5B0 115 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 MEGF11A6BM72 1044 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 OR5H15A6NDH6 313 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 TMEM200CA6NKL6 621 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 FAM90A27PA6NNH2 459 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 H0YIG0 161 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 GFYI3L273 518 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 EIF3FO00303 357 aaPredicted RBP9.43□□□□□ -0.9
SCFD1-220ENST00000556486 ENO3P13929 434 aaPredicted RBP9.43□□□□□ -0.9
SCFD1-220ENST00000556486 ABOP16442 354 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 HRH2P25021 359 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 MGAT1P26572 445 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 FMO4P31512 558 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 RPA3P35244 121 aaPredicted RBP9.43□□□□□ -0.9
SCFD1-220ENST00000556486 GSK3AP49840 483 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 EFNA3P52797 238 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 PNLIPRP1P54315 467 aa9.43□□□□□ -0.9
SCFD1-220ENST00000556486 BASP1P80723 227 aaKnown RBP9.43□□□□□ -0.9
SCFD1-220ENST00000556486 FOXD4Q12950 439 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms