RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ATAD1Q8NBU5 361 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 OR5K1Q8NHB7 308 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 GANCQ8TET4 914 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 TCTN2Q96GX1 697 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF419Q96HQ0 510 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 DSN1Q9H410 356 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SMURF1Q9HCE7 757 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 FAM118AQ9NWS6 357 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 TAS2R9Q9NYW1 312 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 MARCH4Q9P2E8 410 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 RHCGQ9UBD6 479 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 NUFIP1Q9UHK0 495 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SAMD4AQ9UPU9 718 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 RP1P56715 2156 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PRAMEF33A0A0G2JMD5 474 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ZCWPW2A0A1B0GU75 182 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SLC1A7O00341 560 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 FPGTO14772 594 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SLC22A2O15244 555 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 INPPL1O15357 1258 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PRAMEF10O60809 474 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ERN1O75460 977 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 BEST1O76090 585 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SLC25A14O95258 325 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PRLP01236 227 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 IL1BP01584 269 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PRKAR1AP10644 381 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PTNP21246 168 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CDH5P33151 784 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 GPR3P46089 330 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ALDH7A1P49419 539 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ERVK-8P63133 956 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CLCA4Q14CN2 919 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF613Q6PF04 617 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 USP30Q70CQ3 517 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 TMEM135Q86UB9 458 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SPARTQ8N0X7 666 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 AADATQ8N5Z0 425 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 KRTCAP2Q8N6L1 136 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ANKFN1Q8N957 763 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SH3RF2Q8TEC5 729 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SMG7Q92540 1137 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 DIO2Q92813 273 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF689Q96CS4 500 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF486Q96H40 463 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 TMEM209Q96SK2 561 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 IL12RB2Q99665 862 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 WACQ9BTA9 647 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CIPCQ9C0C6 399 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 MRPL18Q9H0U6 180 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 MMP28Q9H239 520 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ADAMTS10Q9H324 1103 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 NMUR1Q9HB89 426 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 EIF2B3Q9NR50 452 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CCDC59Q9P031 241 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 FBXO9Q9UK97 447 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 FBXW11Q9UKB1 542 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 MKL2Q9ULH7 1088 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SPAG17Q6Q759 2223 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 IQCMA0A1B0GVH7 501 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 FAM234BA2RU67 622 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ISPDA4D126 451 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SGTAO43765 313 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CREG1O75629 220 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 GBAP04062 536 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 YES1P07947 543 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 STSP08842 583 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 NR2F6P10588 404 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PAICSP22234 425 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PRDX3P30048 256 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SSTR4P31391 388 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SHMT2P34897 504 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 HTRA4P83105 476 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SMAD3P84022 425 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 USP39Q53GS9 565 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 XKR6Q5GH73 641 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 C6orf136Q5SQH8 315 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF678Q5SXM1 525 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 OR4F3Q6IEY1 312 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 DCLRE1AQ6PJP8 1040 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 CARM1Q86X55 608 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ZZZ3Q8IYH5 903 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 NPWQ8N729 165 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 GRPEL2Q8TAA5 225 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 EEF1AKMT1Q8WVE0 214 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 PIK3R3Q92569 461 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SERPINB11Q96P15 392 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ELF4Q99607 663 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 COPS8Q99627 209 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 HTATIP2Q9BUP3 242 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ZYG11BQ9C0D3 744 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 MED28Q9H204 178 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 TRIT1Q9H3H1 467 aaKnown RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ZBTB20Q9HC78 741 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-203ENST00000547825 IL1RAPQ9NPH3 570 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 ABCC13Q9NSE7 274 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 TVP23BQ9NYZ1 205 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 MAT2BQ9NZL9 334 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SNX7Q9UNH6 387 aa5.29□□□□□ -1.56
LIMA1-203ENST00000547825 SNX6Q9UNH7 406 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms