RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 CYP4F8P98187 520 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 TRAM2Q15035 370 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 GDPD4Q6W3E5 623 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 CFAP206Q8IYR0 622 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 ITFG2Q969R8 447 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 C11orf24Q96F05 449 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 SRMSQ9H3Y6 488 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 BPIFA1Q9NP55 256 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 TMPRSS11EQ9UL52 423 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 LIPT1Q9Y234 373 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 DNMT3AQ9Y6K1 912 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 A8MT66 165 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 CENPBD1B2RD01 187 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 H3BNC9 293 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 WRBO00258 174 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 PRAF2O60831 178 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 PPP1R11O60927 126 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 MATN4O95460 622 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 RABIFP47224 123 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 CDH12P55289 794 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 OGFRL1Q5TC84 451 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-211ENST00000543710 FAM86B1Q8N7N1 296 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 COX18Q8N8Q8 333 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 GPR150Q8NGU9 434 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 THAP6Q8TBB0 222 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 SLC35A5Q9BS91 424 aa7.56□□□□□ -1.2
VPS13D-211ENST00000543710 DOT1LQ8TEK3 1739 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 FLRT2O43155 660 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 RP2O75695 350 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 CLUP10909 449 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 KCNC4Q03721 635 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 DCAF12Q5T6F0 453 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 UNC5DQ6UXZ4 953 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 DNAJC14Q6Y2X3 702 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF782Q6ZMW2 699 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 FRRS1Q6ZNA5 592 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 LINGO2Q7L985 606 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 CIB1Q99828 191 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 B3GNT5Q9BYG0 378 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 UNKLQ9H9P5 680 aaKnown RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 BRF2Q9HAW0 419 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 TNFRSF10DQ9UBN6 386 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 GPR160Q9UJ42 338 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 FZD4Q9ULV1 537 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 MAB21L2Q9Y586 359 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 H0Y858 1186 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 PRAMEF11O60813 436 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ECI2O75521 394 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 RETP07949 1114 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 CD36P16671 472 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 SPEM2Q0P670 501 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 WSCD2Q2TBF2 565 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 CEACAM20Q6UY09 585 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 LYSMD3Q7Z3D4 306 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 UBQLNLQ8IYU4 475 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 STOML3Q8TAV4 291 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ZCCHC14Q8WYQ9 949 aaKnown RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 S100A16Q96FQ6 103 aaKnown RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 APOLD1Q96LR9 279 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 OR2AG1Q9H205 316 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 DTLQ9NZJ0 730 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 KLRC4-KLRK1H3BQV0 150 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 L7N2F9 121 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 TFECO14948 347 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ZBTB11O95625 1053 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 SAGP10523 405 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 FOLR3P41439 243 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 NCBP2P52298 156 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 TAS2R31P59538 309 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 TRA2BP62995 288 aaKnown RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 VAMP2P63027 116 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 PRAMEF14Q5SWL7 426 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ARHGAP40Q5TG30 622 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 PRAMEF13Q5VWM6 474 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 SFXN5Q8TD22 340 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 LRCH3Q96II8 777 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 DGAT2Q96PD7 388 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 CCM2LQ9NUG4 571 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 PRODH2Q9UF12 536 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 PISDQ9UG56 409 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 BTBD17A6NE02 478 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ELOA3DA6NLF2 546 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 C9IYK1 514 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 MAP3K6O95382 1288 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 C1RP00736 705 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 NT5EP21589 574 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 CPN2P22792 545 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ERFP50548 548 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 GPR143P51810 404 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ATXN1P54253 815 aaKnown RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ADAM17P78536 824 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 CD47Q08722 323 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 RAPSNQ13702 412 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ELOA3BQ3SY89 546 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF404Q494X3 552 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 FAM109BQ6ICB4 259 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 SLC8B1Q6J4K2 584 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 LCN8Q6JVE9 175 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 AHSA2Q719I0 299 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms