RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	FITM1	A5D6W6	292 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	NDUFAB1	O14561	156 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	PLD2	O14939	933 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	LSM1	O15116	133 aa	Known RBP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	ZNF749	O43361	778 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	PCDH7	O60245	1069 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	ETHE1	O95571	254 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	FAM107A	O95990	144 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	FGF5	P12034	268 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	CCL4	P13236	92 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	ALOX12	P18054	663 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	IL1RN	P18510	177 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	ALAS2	P22557	587 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	PRPH2	P23942	346 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	TSFM	P43897	325 aa	Known RBP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	EMP3	P54852	163 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	MTTP	P55157	894 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	RAB8A	P61006	207 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	STX1B	P61266	288 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	ERVK-8	P63133	956 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	BTN3A2	P78410	334 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	TARDBP	Q13148	414 aa	Known RBP eCLIP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	PUM1	Q14671	1186 aa	Known RBP eCLIP	11.31	□□□□□ -0.6	4e-6	■□□□□ 8.5
DDB1-223	ENST00000543658	SMU1	Q2TAY7	513 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	PRTG	Q2VWP7	1150 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	ADPRM	Q3LIE5	342 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	GKAP1	Q5VSY0	366 aa	Predicted RBP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	OR4C11	Q6IEV9	310 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	TMEM214	Q6NUQ4	689 aa	Known RBP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	CYP20A1	Q6UW02	462 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	TTLL10	Q6ZVT0	673 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	ZFAND4	Q86XD8	727 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	PARP9	Q8IXQ6	854 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	METTL4	Q8N3J2	472 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	C1orf52	Q8N6N3	182 aa	Known RBP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	OR2T11	Q8NH01	316 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	ACTRT2	Q8TDY3	377 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	UTP15	Q8TED0	518 aa	Known RBP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	STON2	Q8WXE9	905 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	C3orf30	Q96M34	536 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	ZNF285	Q96NJ3	590 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	TEFM	Q96QE5	360 aa	Known RBP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	TAAR9	Q96RI9	348 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	CCT8L2	Q96SF2	557 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	CTRC	Q99895	268 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	CCDC28B	Q9BUN5	200 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	KLHL31	Q9H511	634 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	WDR55	Q9H6Y2	383 aa	Predicted RBP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	AKTIP	Q9H8T0	292 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	ACTR5	Q9H9F9	607 aa	Predicted RBP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	NOP53	Q9NZM5	478 aa	Known RBP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	CDC14A	Q9UNH5	594 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	SATB2	Q9UPW6	733 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	POLR3H	Q9Y535	204 aa	Predicted RBP	11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	SLC22A7	Q9Y694	548 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	SPACA6	W5XKT8	324 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	NUP210L	Q5VU65	1888 aa		11.31	□□□□□ -0.6
DDB1-223	ENST00000543658	WDR87	Q6ZQQ6	2873 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658		A0A0G2JN53	185 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658		A0A1B0GX78	115 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658		E9PBE3	544 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	PLPP1	O14494	284 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	DSCR3	O14972	297 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	HYAL3	O43820	417 aa	Predicted RBP	11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	B3GALT2	O43825	422 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	KLHL41	O60662	606 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	CPNE3	O75131	537 aa	Known RBP	11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	GUCY1B2	O75343	617 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	ITIH1	P19827	911 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	TIA1	P31483	386 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	IDH3A	P50213	366 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	CBX1	P83916	185 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	HYAL2	Q12891	473 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	FAM53B	Q14153	422 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	RPS6KA2	Q15349	733 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	DEFB134	Q4QY38	66 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	C6orf136	Q5SQH8	315 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	CCNYL2	Q5T2Q4	361 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	CGB2	Q6NT52	195 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	ABHD17C	Q6PCB6	329 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658		Q6ZSR9	355 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	MAVS	Q7Z434	540 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	COMMD6	Q7Z4G1	85 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	SPATA19	Q7Z5L4	167 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	FAM9C	Q8IZT9	166 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	BMPER	Q8N8U9	685 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	ANKS4B	Q8N8V4	417 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	CDC26	Q8NHZ8	85 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	BCAS4	Q8TDM0	211 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	MVB12A	Q96EY5	273 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	MMAB	Q96EY8	250 aa	Predicted RBP	11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	APIP	Q96GX9	242 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	MAEL	Q96JY0	434 aa	Known RBP	11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	SERINC2	Q96SA4	455 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	EBF4	Q9BQW3	602 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	C1orf50	Q9BV19	199 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	EBPL	Q9BY08	206 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	ASPSCR1	Q9BZE9	553 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	ULBP3	Q9BZM4	244 aa		11.3	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms