RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 KMOO15229 486 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 SPNP16150 400 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 CD72P21854 359 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 CBLP22681 906 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 LHCGRP22888 699 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 XCR1P46094 333 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 GJA8P48165 433 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 IDH2P48735 452 aaKnown RBP13.18□□□□□ -0.3
VPS33A-208ENST00000543633 PTSQ03393 145 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 EXOC3L2Q2M3D2 409 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 CRB2Q5IJ48 1285 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.18□□□□□ -0.3
VPS33A-208ENST00000543633 SYTL1Q8IYJ3 562 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 NAGSQ8N159 534 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 CRIPAKQ8N1N5 446 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 C1orf52Q8N6N3 182 aaKnown RBP13.18□□□□□ -0.3
VPS33A-208ENST00000543633 FIBINQ8TAL6 211 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 VOPP1Q96AW1 172 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 REPS1Q96D71 796 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 TRNT1Q96Q11 434 aaKnown RBP13.18□□□□□ -0.3
VPS33A-208ENST00000543633 PIP5K1AQ99755 562 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 CCM2Q9BSQ5 444 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 TAPBPLQ9BX59 468 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 TMEM184CQ9NVA4 438 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 EHD3Q9NZN3 535 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 HCSTQ9UBK5 93 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 ZAR1LA6NP61 321 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 PDZK1P1A8MUH7 402 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 E7EQ34 232 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 ZW10O43264 779 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF30P17039 623 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 GTF2E2P29084 291 aaKnown RBP13.18□□□□□ -0.3
VPS33A-208ENST00000543633 GKP32189 559 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 SLC15A1P46059 708 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 CDH12P55289 794 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 RHAGQ02094 409 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 EEF1A2Q05639 463 aaKnown RBP13.18□□□□□ -0.3
VPS33A-208ENST00000543633 LMAN2Q12907 356 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 SCARB2Q14108 478 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 MPPE1Q53F39 396 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 DGKKQ5KSL6 1271 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 MEDAGQ5VYS4 303 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 Q6ZPB1 254 aaPredicted RBP13.18□□□□□ -0.3
VPS33A-208ENST00000543633 GDPD3Q7L5L3 318 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 TRIM69Q86WT6 500 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 RNF130Q86XS8 419 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 DNAJC5GQ8N7S2 189 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 IL17RDQ8NFM7 739 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 CDC26Q8NHZ8 85 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 TIFAQ96CG3 184 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 CHCHD6Q9BRQ6 235 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 CENPOQ9BU64 300 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 ATG10Q9H0Y0 220 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 ABCG8Q9H221 673 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 REEP4Q9H6H4 257 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 CCDC177Q9NQR7 707 aaPredicted RBP13.18□□□□□ -0.3
VPS33A-208ENST00000543633 DYRK4Q9NR20 520 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 CLN6Q9NWW5 311 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 FTSJ1Q9UET6 329 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 TMPRSS11EQ9UL52 423 aa13.18□□□□□ -0.3
VPS33A-208ENST00000543633 MKI67P46013 3256 aaKnown RBP13.17□□□□□ -0.3
VPS33A-208ENST00000543633 FAM172BPA6NC97 362 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 PCDH7O60245 1069 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 KIAA0513O60268 411 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 CCNB2O95067 398 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 CATP04040 527 aaKnown RBP13.17□□□□□ -0.3
VPS33A-208ENST00000543633 TRAPPC2P0DI81 140 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 TRAPPC2BP0DI82 140 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 RPL17P18621 184 aaKnown RBP13.17□□□□□ -0.3
VPS33A-208ENST00000543633 CHMP24386 653 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF763Q0D2J5 394 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 PDE7AQ13946 482 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 PLAG1Q6DJT9 500 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 C22orf39Q6P5X5 142 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 TRIM40Q6P9F5 258 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 TMEM150AQ86TG1 271 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 ATCAYQ86WG3 371 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 B3GNT7Q8NFL0 401 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 OR56A3Q8NH54 315 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 MTERF3Q96E29 417 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 WDFY2Q96P53 400 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 DEFB118Q96PH6 123 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 SNX18Q96RF0 628 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 MTERF1Q99551 399 aaKnown RBP13.17□□□□□ -0.3
VPS33A-208ENST00000543633 MGLLQ99685 303 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 NIPSNAP1Q9BPW8 284 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 SLC30A2Q9BRI3 323 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 SGK2Q9HBY8 427 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 NEK6Q9HC98 313 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 MS4A12Q9NXJ0 267 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 FBXL12Q9NXK8 326 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 NDOR1Q9UHB4 597 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 OGDHLQ9ULD0 1010 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 HS3ST2Q9Y278 367 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF451Q9Y4E5 1061 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 CFAP20Q9Y6A4 193 aaKnown RBP13.17□□□□□ -0.3
VPS33A-208ENST00000543633 ENPP4Q9Y6X5 453 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 TBKBP1A7MCY6 615 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 ARHGEF33A8MVX0 844 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 UGT2B17O75795 530 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms