RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 TXNDC5Q8NBS9 432 aaKnown RBP7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 RHOXF1Q8NHV9 184 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 DNAJB14Q8TBM8 379 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 PIH1D2Q8WWB5 315 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 MYDGFQ969H8 173 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 YIPF5Q969M3 257 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 AHCYL2Q96HN2 611 aaKnown RBP7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 NODALQ96S42 347 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 MRPL57Q9BQC6 102 aaKnown RBP7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 ZNF700Q9H0M5 742 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 RIMS4Q9H426 269 aaPredicted RBP7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 TOR3AQ9H497 397 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 SUV39H2Q9H5I1 410 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 PRDM9Q9NQV7 894 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 TOR4AQ9NXH8 423 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 WWOXQ9NZC7 414 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 GAB2Q9UQC2 676 aa7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 EIF3LQ9Y262 564 aaKnown RBP7.71□□□□□ -1.18
PDLIM5-221ENST00000542407 NCF1BA6NI72 391 aaPredicted RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 A8MUA0 341 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 NCF1CA8MVU1 366 aaPredicted RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 ZNF99A8MXY4 864 aaPredicted RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 H7C0S8 307 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 GRM6O15303 877 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 CIDEAO60543 219 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 DNTTP04053 509 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 RHOP08100 348 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 HTR1AP08908 422 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 THEGLP0DJG4 465 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 MYOGP15173 224 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 EPCAMP16422 314 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 KCNA5P22460 613 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 KELP23276 732 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 DDX6P26196 483 aaKnown RBP eCLIP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 PDHA2P29803 388 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 EIF2DP41214 584 aaKnown RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 MAP2K4P45985 399 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 OR2B6P58173 313 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 DNAJB13P59910 316 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 AP1S1P61966 158 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 CDKN3Q16667 212 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 GPR158Q5T848 1215 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 FAM45BPQ6NSW5 357 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 AFTPHQ6ULP2 937 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 OXR1Q8N573 874 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 TP53I13Q8NBR0 393 aaPredicted RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 OR4D10Q8NGI6 311 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 FAM45AQ8TCE6 357 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 GTF3AQ92664 365 aaKnown RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 RORBQ92753 470 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 TSPAN17Q96FV3 270 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 ADGRE3Q9BY15 652 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 IFT46Q9NQC8 304 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 FBXO8Q9NRD0 319 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 ABCB8Q9NUT2 735 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 INTS10Q9NVR2 710 aaKnown RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 TRMT6Q9UJA5 497 aaKnown RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 ANAPC2Q9UJX6 822 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 CRYL1Q9Y2S2 319 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 GBF1Q92538 1859 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 DOCK6Q96HP0 2047 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 ANGPT2O15123 496 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 XPNPEP2O43895 674 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 NOBOXO60393 691 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 PGLSO95336 258 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 ANXA6P08133 673 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 FCGR1AP12314 374 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 ITGB6P18564 788 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 CTSOP43234 321 aaPredicted RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 KCNC1P48547 511 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 CASP6P55212 293 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 PPP1R8Q12972 351 aaKnown RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 BNIP2Q12982 314 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 CSHL1Q14406 222 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 ZNF77Q15935 545 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 DGKKQ5KSL6 1271 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 MANEAQ5SRI9 462 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 C6orf141Q5SZD1 244 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 MRNIPQ6NTE8 343 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 RETSATQ6NUM9 610 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 PIANPQ8IYJ0 282 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 SLC37A3Q8NCC5 494 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 ZBTB44Q8NCP5 570 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 RPL3LQ92901 407 aaKnown RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 MUL1Q969V5 352 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 SNX18Q96RF0 628 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 AARSD1Q9BTE6 412 aaKnown RBP7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 POPDC3Q9HBV1 291 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 HCFC2Q9Y5Z7 792 aa7.7□□□□□ -1.18
PDLIM5-221ENST00000542407 J3KRW8 73 aa7.69□□□□□ -1.18
PDLIM5-221ENST00000542407 GAPDHSO14556 408 aaPredicted RBP7.69□□□□□ -1.18
PDLIM5-221ENST00000542407 SSX4O60224 188 aa7.69□□□□□ -1.18
PDLIM5-221ENST00000542407 ULK1O75385 1050 aa7.69□□□□□ -1.18
PDLIM5-221ENST00000542407 PIAS2O75928 621 aa7.69□□□□□ -1.18
PDLIM5-221ENST00000542407 FGF19O95750 216 aa7.69□□□□□ -1.18
PDLIM5-221ENST00000542407 DHFRP00374 187 aa7.69□□□□□ -1.18
PDLIM5-221ENST00000542407 APOA1P02647 267 aa7.69□□□□□ -1.18
PDLIM5-221ENST00000542407 THRBP10828 461 aa7.69□□□□□ -1.18
PDLIM5-221ENST00000542407 LPOP22079 712 aaPredicted RBP7.69□□□□□ -1.18
PDLIM5-221ENST00000542407 F8A1P23610 371 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms