RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 F10P00742 488 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 FHP07954 510 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 LTA4HP09960 611 aaKnown RBP10.02□□□□□ -0.81
CD44-227ENST00000528086 CTAGE8P0CG41 777 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 MYBL2P10244 700 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 GNAZP19086 355 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 CRABP2P29373 138 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 GRK3P35626 688 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 CASP2P42575 452 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 GLRBP48167 497 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 SLC12A2P55011 1212 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 SRSF11Q05519 484 aaKnown RBP10.02□□□□□ -0.81
CD44-227ENST00000528086 HERC3Q15034 1050 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 MINDY4Q4G0A6 757 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 AGAP7PQ5VUJ5 663 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 ISLR2Q6UXK2 745 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 TMIGD1Q6UXZ0 262 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 ZNF793Q6ZN11 406 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 FRA10AC1Q70Z53 315 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 CTAGE4Q8IX94 777 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 KBTBD2Q8IY47 623 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 NFAM1Q8NET5 270 aaPredicted RBP10.02□□□□□ -0.81
CD44-227ENST00000528086 PPP4R1Q8TF05 950 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 TBC1D20Q96BZ9 403 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 AGAP4Q96P64 663 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 OR1F2PQ96R84 312 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 TAAR6Q96RI8 345 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 LMF1Q96S06 567 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 RHBGQ9H310 441 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 EHD1Q9H4M9 534 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 NECTIN3Q9NQS3 549 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 PRDM7Q9NQW5 492 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 WWOXQ9NZC7 414 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 GPRC5BQ9NZH0 403 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 CD274Q9NZQ7 290 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 KCMF1Q9P0J7 381 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 PTGFRNQ9P2B2 879 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 TXNDC16Q9P2K2 825 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 RNF112Q9ULX5 631 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 EML6Q6ZMW3 1958 aa10.02□□□□□ -0.81
CD44-227ENST00000528086 SPTBN1Q01082 2364 aaKnown RBP10.01□□□□□ -0.81
CD44-227ENST00000528086 A0A096LPK6 155 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 A0A1B0GTL3 188 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 MAGEB17A8MXT2 336 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 CYR61O00622 381 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 B4GALT2O60909 372 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 SEMA7AO75326 666 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 CLEC3AO75596 197 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 SIX3O95343 332 aaPredicted RBP10.01□□□□□ -0.81
CD44-227ENST00000528086 WDPCPO95876 746 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 MAOAP21397 527 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 PPP2R1BP30154 601 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 RGS1Q08116 209 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 ILF2Q12905 390 aaKnown RBP10.01□□□□□ -0.81
CD44-227ENST00000528086 ABRAXAS2Q15018 415 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 TBCCQ15814 346 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 PDK4Q16654 411 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 GLE1Q53GS7 698 aaKnown RBP10.01□□□□□ -0.81
CD44-227ENST00000528086 SFT2D3Q587I9 215 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 TECRLQ5HYJ1 363 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 ZNF324BQ6AW86 544 aaPredicted RBP10.01□□□□□ -0.81
CD44-227ENST00000528086 FCRLBQ6BAA4 426 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 PLAG1Q6DJT9 500 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 ABHD17CQ6PCB6 329 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 ZNF227Q86WZ6 799 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 SCUBE1Q8IWY4 988 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 LAS2Q8IYD9 372 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 TCAIMQ8N3R3 496 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 KIF2BQ8N4N8 673 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 GALNT11Q8NCW6 608 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 TRPV3Q8NET8 790 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 STAG3L4Q8TBR4 150 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 ZNF473Q8WTR7 871 aaKnown RBP10.01□□□□□ -0.81
CD44-227ENST00000528086 F2RL3Q96RI0 385 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 CSF3RQ99062 836 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 PAFAH2Q99487 392 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 FMO2Q99518 471 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 MS4A8Q9BY19 250 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 NMRAL1Q9HBL8 299 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 RIC8BQ9NVN3 520 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 NUDT4Q9NZJ9 180 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 ZNF223Q9UK11 482 aaPredicted RBP10.01□□□□□ -0.81
CD44-227ENST00000528086 NFU1Q9UMS0 254 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 ACOT9Q9Y305 439 aa10.01□□□□□ -0.81
CD44-227ENST00000528086 TCRBV16S1A1N1A0A5B0 115 aa10□□□□□ -0.81
CD44-227ENST00000528086 RTCAO00442 366 aaKnown RBP10□□□□□ -0.81
CD44-227ENST00000528086 CCNT2O60583 730 aaKnown RBP10□□□□□ -0.81
CD44-227ENST00000528086 IPO13O94829 963 aaKnown RBP10□□□□□ -0.81
CD44-227ENST00000528086 KLHL2O95198 593 aa10□□□□□ -0.81
CD44-227ENST00000528086 ALPPP05187 535 aa10□□□□□ -0.81
CD44-227ENST00000528086 CYC1P08574 325 aa10□□□□□ -0.81
CD44-227ENST00000528086 CXCR2P25025 360 aa10□□□□□ -0.81
CD44-227ENST00000528086 CERS1P27544 350 aa10□□□□□ -0.81
CD44-227ENST00000528086 TNFSF10P50591 281 aa10□□□□□ -0.81
CD44-227ENST00000528086 GPR143P51810 404 aa10□□□□□ -0.81
CD44-227ENST00000528086 SLC26A5P58743 744 aa10□□□□□ -0.81
CD44-227ENST00000528086 BTN3A2P78410 334 aa10□□□□□ -0.81
CD44-227ENST00000528086 CHIT1Q13231 466 aa10□□□□□ -0.81
CD44-227ENST00000528086 UBAP2LQ14157 1087 aaKnown RBP10□□□□□ -0.81
CD44-227ENST00000528086 NAA30Q147X3 362 aaPredicted RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms