RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 C16orf47Q6ZP98 133 aaPredicted RBP18.94■□□□□ 0.62
SQSTM1-215ENST00000514093 PIWIL4Q7Z3Z4 852 aaKnown RBP18.94■□□□□ 0.62
SQSTM1-215ENST00000514093 C17orf64Q86WR6 236 aa18.94■□□□□ 0.62
SQSTM1-215ENST00000514093 ARMC10Q8N2F6 343 aa18.94■□□□□ 0.62
SQSTM1-215ENST00000514093 MYRIPQ8NFW9 859 aa18.94■□□□□ 0.62
SQSTM1-215ENST00000514093 NECTIN3Q9NQS3 549 aa18.94■□□□□ 0.62
SQSTM1-215ENST00000514093 RASSF1Q9NS23 344 aa18.94■□□□□ 0.62
SQSTM1-215ENST00000514093 MED16Q9Y2X0 877 aa18.94■□□□□ 0.62
SQSTM1-215ENST00000514093 FAM215AQ9Y5M1 114 aa18.94■□□□□ 0.62
SQSTM1-215ENST00000514093 MIF4GDA9UHW6 222 aaKnown RBP18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 NDUFS4O43181 175 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 ADH7P40394 386 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 BASP1P80723 227 aaKnown RBP18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 RTL6Q6ICC9 239 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 CILP2Q8IUL8 1156 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 CPNE9Q8IYJ1 553 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 RNF214Q8ND24 703 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 ACRBPQ8NEB7 543 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 ALPK1Q96QP1 1244 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 RHBGQ9H310 441 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 LIN28AQ9H9Z2 209 aaKnown RBP18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 TIMMDC1Q9NPL8 285 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 ERVK-11Q9UQG0 969 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 DRG1Q9Y295 367 aaKnown RBP18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 LIPGQ9Y5X9 500 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 DNAJC13O75165 2243 aa18.93■□□□□ 0.62
SQSTM1-215ENST00000514093 A0A0G2JMM0 328 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 A0A1W2PPB8 328 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 A0A1W2PRS3 328 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 TCRBV16S1A1N1A0A5B0 115 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 KIR3DP1A8MWS1 328 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 G3V3Y1 287 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 TUBB4AP04350 444 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 ZNF888P0CJ79 500 aaPredicted RBP18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 ALOX12P18054 663 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 OGNP20774 298 aaKnown RBP18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 GRK3P35626 688 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 KIR2DL3P43628 341 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 SKOR2Q2VWA4 1001 aaPredicted RBP18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 NEPROQ6NW34 567 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 ZNF549Q6P9A3 640 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 B3GNT6Q6ZMB0 384 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 QSOX2Q6ZRP7 698 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 WDR53Q7Z5U6 358 aaPredicted RBP18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 CDC20BQ86Y33 519 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 APCDD1LQ8NCL9 501 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 WFDC11Q8NEX6 87 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 SREK1Q8WXA9 508 aaKnown RBP18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 SMC6Q96SB8 1091 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 PCBD2Q9H0N5 130 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 EIF2B3Q9NR50 452 aaKnown RBP18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 CRIM1Q9NZV1 1036 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 ADAMTS6Q9UKP5 1117 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 SOX13Q9UN79 622 aa18.92■□□□□ 0.62
SQSTM1-215ENST00000514093 HRNRQ86YZ3 2850 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 OR1F1O43749 312 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 CEP104O60308 925 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 MYO1DO94832 1006 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 HNF4AP41235 474 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 CLCN2P51788 898 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 TERF1P54274 439 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 NAE1Q13564 534 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 AGTRAPQ6RW13 159 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 BIVMQ86UB2 503 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 PSD4Q8NDX1 1056 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 B3GNT7Q8NFL0 401 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 OR2M7Q8NG81 312 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 GOT1L1Q8NHS2 421 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 SLCO2A1Q92959 643 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 GPR21Q99679 349 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 FBXO6Q9NRD1 293 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 ZFATQ9P243 1243 aa18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 ZNF223Q9UK11 482 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-215ENST00000514093 IGKV3D-11A0A0A0MRZ8 115 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 CTAGE9A4FU28 777 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 PRKNO60260 465 aaPredicted RBP18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 IPO7O95373 1038 aaKnown RBP18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 ENO3P13929 434 aaPredicted RBP18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 SSR4P51571 173 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 RAB8AP61006 207 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 KIAA0930Q6ICG6 404 aaPredicted RBP18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 IL20RBQ6UXL0 311 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 RAD9BQ6WBX8 426 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 TAOK1Q7L7X3 1001 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 DENND6AQ8IWF6 608 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 CREB3L4Q8TEY5 395 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 HES6Q96HZ4 224 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 TTTY12Q9BZ98 90 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 FAM129AQ9BZQ8 928 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 ZDHHC11Q9H8X9 412 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 PRDM9Q9NQV7 894 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 INTS10Q9NVR2 710 aaKnown RBP18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 ALKBH4Q9NXW9 302 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 PDE10AQ9Y233 779 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 DHRS7Q9Y394 339 aa18.9■□□□□ 0.62
SQSTM1-215ENST00000514093 TCRBV7S3A2A0A539 114 aa18.89■□□□□ 0.61
SQSTM1-215ENST00000514093 FIGNL2A6NMB9 653 aa18.89■□□□□ 0.61
SQSTM1-215ENST00000514093 ACOT7O00154 380 aa18.89■□□□□ 0.61
SQSTM1-215ENST00000514093 AVILO75366 819 aa18.89■□□□□ 0.61
SQSTM1-215ENST00000514093 NPPBP16860 134 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms