RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 SCN5AQ14524 2016 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 CCDC162PA2VCL2 907 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 SURF4O15260 269 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 MAGEB2O15479 319 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 KERAO60938 352 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZNF821O75541 412 aaPredicted RBP3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 CEACAM4O75871 244 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 CLDN1O95832 211 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 HMOX1P09601 288 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 CPA3P15088 417 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 MMP12P39900 470 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 OPRL1P41146 370 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 ARF5P84085 180 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 NPRL3Q12980 569 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 IFI44LQ53G44 452 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 C17orf107Q6ZR85 190 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 RFPL4BQ6ZWI9 263 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 PRSS42Q7Z5A4 293 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 TMEM126BQ8IUX1 230 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZNF444Q8N0Y2 327 aaPredicted RBP3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 THEM5Q8N1Q8 247 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 NAT8LQ8N9F0 302 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 GGHQ92820 318 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 ATP6V0A1Q93050 837 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 ULK4Q96C45 1275 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 C5orf30Q96GV9 206 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 ART5Q96L15 291 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 LURAP1Q96LR2 239 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 FAM218AQ96MZ4 157 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 USP28Q96RU2 1077 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 PCDHB18PQ96TA0 734 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 MTIF3Q9H2K0 278 aaKnown RBP3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 MTHFD2LQ9H903 347 aaPredicted RBP3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 MAGEF1Q9HAY2 307 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 PNPLA3Q9NST1 481 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 MIS18AQ9NYP9 233 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 TMEM181Q9P2C4 612 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 DBF4Q9UBU7 674 aaPredicted RBP3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 MAD2L2Q9UI95 211 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 EXOGQ9Y2C4 368 aaKnown RBP3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 KNSTRNQ9Y448 316 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 CSNK1G3Q9Y6M4 447 aa3.5□□□□□ -1.85
HMGB1P28-201ENST00000507778 NEDD4P46934 1319 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 hCG_38984A0A1B0GV85 526 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 TCP10L2B9ZVM9 353 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 DDX39AO00148 427 aaKnown RBP3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZFAND5O76080 213 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 GAS8O95995 478 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 FEN1P39748 380 aaKnown RBP3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 ATP12AP54707 1039 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 CYCSP99999 105 aaKnown RBP3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 PMP22Q01453 160 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 CNTN1Q12860 1018 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 DRP2Q13474 957 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 CEACAM7Q14002 265 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 MTF1Q14872 753 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 STXBP2Q15833 593 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 MTHFSDQ2M296 383 aaKnown RBP3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 BSPRYQ5W0U4 402 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 CES4AQ5XG92 561 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZNF776Q68DI1 518 aaPredicted RBP3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 Q6ZRP5 223 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 LAX1Q8IWV1 398 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 SLC22A15Q8IZD6 547 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 SFRP1Q8N474 314 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 MGARPQ8TDB4 240 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 SLCO2A1Q92959 643 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 WBP2Q969T9 261 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 FAM46BQ96A09 425 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 SLC35C1Q96A29 364 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 BPIFA2Q96DR5 249 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 EPSTI1Q96J88 318 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 UBAC1Q9BSL1 405 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 ACAT2Q9BWD1 397 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 LRRC2Q9BYS8 371 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 MED20Q9H944 212 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 VIPAS39Q9H9C1 493 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 SPHK2Q9NRA0 654 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 DNAJC11Q9NVH1 559 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 LNPEPQ9UIQ6 1025 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 PLCL2Q9UPR0 1127 aa3.49□□□□□ -1.85
HMGB1P28-201ENST00000507778 GREB1LQ9C091 1923 aaPredicted RBP3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 TMEM129A0AVI4 362 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 GTPBP10A4D1E9 387 aaKnown RBP3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 C5orf51A6NDU8 294 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 P4HA1P13674 534 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 MYOGP15173 224 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 TYMPP19971 482 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 C4BPBP20851 252 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 PRKACGP22612 351 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 GIFP27352 417 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 SMSP52788 366 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 UCP2P55851 309 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 HUNKP57058 714 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 BTG1P62324 171 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 IRX4P78413 519 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 AP1B1Q10567 949 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 HYAL1Q12794 435 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 LCP2Q13094 533 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 LASP1Q14847 261 aaKnown RBP3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms