RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 MDS2Q8NDY4 140 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 ELP5Q8TE02 316 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 RHBDF1Q96CC6 855 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 SMIM10Q96HG1 83 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 PDLIM2Q96JY6 352 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 PWWP2AQ96N64 755 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 TSNARE1Q96NA8 513 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 PSAT1Q9Y617 370 aa13.55□□□□□ -0.24
HMGCS1-203ENST00000507004 TCRBV16S1A1N1A0A5B0 115 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 ASPDHA6ND91 283 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 ANKDD1BA6NHY2 528 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 SAGE2PA6NJ88 616 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 USP27XA6NNY8 438 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 GABRR3A8MPY1 467 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 FCHO1O14526 889 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 CLGNO14967 610 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 TP73O15350 636 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 B4GALT2O60909 372 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 CDC123O75794 336 aaPredicted RBP13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 UNC5CO95185 931 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 STMN1P16949 149 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 GGT5P36269 586 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 DCTP40126 519 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 SNRPNP63162 240 aaKnown RBP13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 OC90Q02509 493 aaPredicted RBP13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 ART3Q13508 389 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 LAPTM5Q13571 262 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 TGFBIQ15582 683 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 OR1C1Q15619 314 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 TSNQ15631 228 aaKnown RBP13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 PAGE2BQ5JRK9 111 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 SLCO4C1Q6ZQN7 724 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 CCDC91Q7Z6B0 441 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 SPNS2Q8IVW8 549 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 EID3Q8N140 333 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 ANKRD53Q8N9V6 530 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 SRFBP1Q8NEF9 429 aaKnown RBP13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 OR5T3Q8NGG3 340 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 CREB3L4Q8TEY5 395 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 MOCOSQ96EN8 888 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 SCMH1Q96GD3 660 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 MCMBPQ9BTE3 642 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 EFCAB11Q9BUY7 163 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 ROGDIQ9GZN7 287 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 RAB17Q9H0T7 212 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 WWOXQ9NZC7 414 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 ENTPD4Q9Y227 616 aa13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 UTP11Q9Y3A2 253 aaKnown RBP13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 KLF2Q9Y5W3 355 aaPredicted RBP13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 PRRC2CQ9Y520 2896 aaKnown RBP13.54□□□□□ -0.24
HMGCS1-203ENST00000507004 IGKV3D-11A0A0A0MRZ8 115 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 CCDC189A1A4V9 331 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 HNRNPRO43390 633 aaKnown RBP13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 F10P00742 488 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 S100BP04271 92 aaPredicted RBP13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 SPRP35270 261 aaPredicted RBP13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 CD96P40200 585 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 CA7P43166 264 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 CYB561P49447 251 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 HSD17B7P56937 341 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 RAB8AP61006 207 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 ALDH6A1Q02252 535 aaKnown RBP13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 NAB1Q13506 487 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 FASTKD3Q14CZ7 662 aaKnown RBP13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 HIST2H2ACQ16777 129 aaPredicted RBP13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 TOR1AIP1Q5JTV8 583 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 HIST2H2AA3Q6FI13 130 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 SLC25A25Q6KCM7 469 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 TRIM40Q6P9F5 258 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 FJX1Q86VR8 437 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 GPSM1Q86YR5 675 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 ARMC10Q8N2F6 343 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 POGLUT1Q8NBL1 392 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 SPATA4Q8NEY3 305 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 TSLPQ969D9 159 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 UBE2E3Q969T4 207 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 TMEM125Q96AQ2 219 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 GPR22Q99680 433 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 RBBP8Q99708 897 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 RBCK1Q9BYM8 510 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 SPNS1Q9H2V7 528 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 TRIM45Q9H8W5 580 aaPredicted RBP13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 SAYSD1Q9NPB0 183 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 DNAJC11Q9NVH1 559 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 LRFN1Q9P244 771 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 IKZF3Q9UKT9 509 aa13.53□□□□□ -0.24
HMGCS1-203ENST00000507004 TRGV8A0A0C4DH27 118 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 B3GALT2O43825 422 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 STK16O75716 305 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 SP1P08047 785 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 SERPINB1P30740 379 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 STX2P32856 288 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 TRHRP34981 398 aaPredicted RBP13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 CLCN2P51788 898 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 RAB38P57729 211 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 KCNK10P57789 538 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 OLR1P78380 273 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 HYAL2Q12891 473 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 SLBPQ14493 270 aaKnown RBP eCLIP13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 GRTP1Q5TC63 336 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms