RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 CYP4Z2PQ8N1L4 340 aa13.72□□□□□ -0.21
TRAF4-212ENST00000498540 TXLNBQ8N3L3 684 aa13.72□□□□□ -0.21
TRAF4-212ENST00000498540 APCDD1LQ8NCL9 501 aa13.72□□□□□ -0.21
TRAF4-212ENST00000498540 SPNS1Q9H2V7 528 aa13.72□□□□□ -0.21
TRAF4-212ENST00000498540 NECTIN3Q9NQS3 549 aa13.72□□□□□ -0.21
TRAF4-212ENST00000498540 SAMD15Q9P1V8 674 aa13.72□□□□□ -0.21
TRAF4-212ENST00000498540 TRBV11-1A0A0K0K1C0 115 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 FAM237BA0A1B0GVD1 139 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 CTAGE15A4D2H0 777 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 USP27XA6NNY8 438 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 EIF3FO00303 357 aaPredicted RBP13.71□□□□□ -0.21
TRAF4-212ENST00000498540 SERPIND1P05546 499 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 CCND1P24385 295 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 VPS41P49754 854 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 CCR8P51685 355 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 TIAL1Q01085 375 aaKnown RBP eCLIP13.71□□□□□ -0.21
TRAF4-212ENST00000498540 HYAL2Q12891 473 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 MYBPHQ13203 477 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 PWP1Q13610 501 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 PHKG1Q16816 387 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 CES4AQ5XG92 561 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 CTAGE6Q86UF2 777 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 MMP21Q8N119 569 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 RNF10Q8N5U6 811 aaKnown RBP13.71□□□□□ -0.21
TRAF4-212ENST00000498540 ABHD11Q8NFV4 315 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 OR4K1Q8NGD4 311 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 EEF1AKMT1Q8WVE0 214 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 PYCR2Q96C36 320 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 OR4K3Q96R72 315 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 AARSD1Q9BTE6 412 aaKnown RBP13.71□□□□□ -0.21
TRAF4-212ENST00000498540 SARGQ9BW04 601 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 DEFB127Q9H1M4 99 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 CXXC4Q9H2H0 198 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 PARVBQ9HBI1 364 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 DEPPQ9NTK1 212 aa13.71□□□□□ -0.21
TRAF4-212ENST00000498540 ZNF223Q9UK11 482 aaPredicted RBP13.71□□□□□ -0.21
TRAF4-212ENST00000498540 TRBC2A0A5B9 178 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 PINLYPA6NC86 204 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 KLK8O60259 260 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 ITGA10O75578 1167 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 HAUS5O94927 633 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 ZWINTO95229 277 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 C8GP07360 202 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 MAGEA6P43360 314 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 SKP1P63208 163 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 DHX9Q08211 1270 aaKnown RBP13.7□□□□□ -0.22
TRAF4-212ENST00000498540 SP140Q13342 867 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 CATSPEREQ5SY80 951 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 ARMC3Q5W041 872 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 TGIF2LYQ8IUE0 185 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 TMEM156Q8N614 296 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 OR5M3Q8NGP4 307 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 NT5CQ8TCD5 201 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 UTP15Q8TED0 518 aaKnown RBP13.7□□□□□ -0.22
TRAF4-212ENST00000498540 NDNQ99608 321 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 HAUS8Q9BT25 410 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 RHBGQ9H310 441 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 PRDM9Q9NQV7 894 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 PNPLA3Q9NST1 481 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 CCM2LQ9NUG4 571 aaPredicted RBP13.7□□□□□ -0.22
TRAF4-212ENST00000498540 KCMF1Q9P0J7 381 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 TRMT6Q9UJA5 497 aaKnown RBP13.7□□□□□ -0.22
TRAF4-212ENST00000498540 FBXO5Q9UKT4 447 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 FBXW2Q9UKT8 454 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 COMMD10Q9Y6G5 202 aa13.7□□□□□ -0.22
TRAF4-212ENST00000498540 EML6Q6ZMW3 1958 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 HRNRQ86YZ3 2850 aaPredicted RBP13.69□□□□□ -0.22
TRAF4-212ENST00000498540 FAM221AA4D161 298 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 FAM166BA8MTA8 275 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 C4orf51C9J302 202 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 NPIPA2E9PIF3 369 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 NPIPA3F8WFD2 350 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 MYO1DO94832 1006 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 FGGP02679 453 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 RNH1P13489 461 aaKnown RBP13.69□□□□□ -0.22
TRAF4-212ENST00000498540 KLK2P20151 261 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 HNF4AP41235 474 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 CLCN2P51788 898 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 RAB8AP61006 207 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 SARNPP82979 210 aaKnown RBP13.69□□□□□ -0.22
TRAF4-212ENST00000498540 RGS1Q08116 209 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 LRRC8EQ6NSJ5 796 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 C16orf47Q6ZP98 133 aaPredicted RBP13.69□□□□□ -0.22
TRAF4-212ENST00000498540 ACAD11Q709F0 780 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 ABHD13Q7L211 337 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 AGGF1Q8N302 714 aaeCLIP13.69□□□□□ -0.22
TRAF4-212ENST00000498540 B3GNT7Q8NFL0 401 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 SNF8Q96H20 258 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 FOXC2Q99958 501 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 LIME1Q9H400 295 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 C20orf96Q9NUD7 363 aaPredicted RBP13.69□□□□□ -0.22
TRAF4-212ENST00000498540 ZFATQ9P243 1243 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 GUCA1BQ9UMX6 200 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 ZKSCAN5Q9Y2L8 839 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 ABCA4P78363 2273 aa13.69□□□□□ -0.22
TRAF4-212ENST00000498540 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.68□□□□□ -0.22
TRAF4-212ENST00000498540 A0A0G2JMM0 328 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 A0A1W2PPB8 328 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 A0A1W2PRS3 328 aa13.68□□□□□ -0.22
TRAF4-212ENST00000498540 SDR42E2A6NKP2 422 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms