RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	TIPARP	Q7Z3E1	657 aa	Known RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	GALNT7	Q86SF2	657 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	PHLDB2	Q86SQ0	1253 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	TMEM135	Q86UB9	458 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	GKN2	Q86XP6	184 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	PRIMA1	Q86XR5	153 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	ZNF677	Q86XU0	584 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	CAMK1D	Q8IU85	385 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	TAGAP	Q8N103	731 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	PGBD5	Q8N414	524 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	ARFGAP1	Q8N6T3	406 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	ENDOV	Q8N8Q3	282 aa	Known RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981		Q8N9G6	341 aa	Predicted RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	MLKL	Q8NB16	471 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	SYT8	Q8NBV8	401 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	MSANTD4	Q8NCY6	345 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	SETD9	Q8NE22	299 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	HCAR2	Q8TDS4	363 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	XAGE5	Q8WWM1	108 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	PATE1	Q8WXA2	126 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	RFK	Q969G6	155 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	FKBP10	Q96AY3	582 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	SLC22A18	Q96BI1	424 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	C19orf60	Q96EN9	201 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	DTD2	Q96FN9	168 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	CMTM3	Q96MX0	182 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	ZNF641	Q96N77	438 aa	Predicted RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	MCEE	Q96PE7	176 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	SNX18	Q96RF0	628 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	MCCC1	Q96RQ3	725 aa	Predicted RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	RANBP9	Q96S59	729 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	NCAPG	Q9BPX3	1015 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	TUBGCP2	Q9BSJ2	902 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	SNRNP25	Q9BV90	132 aa	Known RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	DDA1	Q9BW61	102 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	SSBP3	Q9BWW4	388 aa	Predicted RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	KRTAP4-8	Q9BYQ9	185 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	TRIM7	Q9C029	511 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	CLSTN2	Q9H4D0	955 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	AKIP1	Q9NQ31	210 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	FAM207A	Q9NSI2	230 aa	Predicted RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	SAMSN1	Q9NSI8	373 aa	Known RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	SPATS2L	Q9NUQ6	558 aa	Known RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	GPATCH2L	Q9NWQ4	482 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	TAB2	Q9NYJ8	693 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	PEMT	Q9UBM1	199 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	UBA2	Q9UBT2	640 aa	Predicted RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	IPO11	Q9UI26	975 aa	Known RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	FZD10	Q9ULW2	581 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	SH2B3	Q9UQQ2	575 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	ENTPD4	Q9Y227	616 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	SLC17A4	Q9Y2C5	497 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	FAM169A	Q9Y6X4	670 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	RTTN	Q86VV8	2226 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	UNC13C	Q8NB66	2214 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	DIDO1	Q9BTC0	2240 aa	Known RBP	4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	CUBN	O60494	3623 aa		4.13	□□□□□ -1.75
VPS52-222	ENST00000495981	IGHV1OR21-1	A0A087WYE8	117 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	TEX13C	A0A0J9YWL9	993 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	KRTAP23-1	A1A580	65 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	GAGE12B	A1L429	117 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	GAGE12H	A6NDE8	117 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	TMEM110-MUSTN1	A8MSY1	372 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	MYO1G	B0I1T2	1018 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	TMX2-CTNND1	H3BSU7	103 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	CACNB4	O00305	520 aa	Predicted RBP	4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	B4GAT1	O43505	415 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	KRT86	O43790	486 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	PAGE4	O60829	102 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	SOCS5	O75159	536 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	SORBS2	O94875	1100 aa	Known RBP	4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	SEC31A	O94979	1220 aa	Known RBP	4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	CPNE6	O95741	557 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	EML2	O95834	649 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	ELFN1	P0C7U0	828 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	CCNB1	P14635	433 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	MATN1	P21941	496 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	AK4	P27144	223 aa	Predicted RBP	4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	TEAD1	P28347	426 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	DUSP1	P28562	367 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	CD1C	P29017	333 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	UGT1A3	P35503	534 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	CPOX	P36551	454 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	PPARG	P37231	505 aa	Predicted RBP	4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	FASLG	P48023	281 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	CPA2	P48052	419 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	CSNK1D	P48730	415 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	RPS6KA3	P51812	740 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	NDST2	P52849	883 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	AIF1	P55008	147 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	OR1D5	P58170	312 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	TPI1	P60174	286 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	POLR2F	P61218	127 aa	Known RBP	4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	AP1S1	P61966	158 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	UBE2H	P62256	183 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	CDC20	Q12834	499 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	TRAF2	Q12933	501 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	IHH	Q14623	411 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	PCLAF	Q15004	111 aa		4.12	□□□□□ -1.75
VPS52-222	ENST00000495981	PTPRR	Q15256	657 aa		4.12	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms