RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SPAG5Q96R06 1193 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 OR6C1Q96RD1 312 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 BARD1Q99728 777 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ABHD6Q9BV23 337 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 UTP14AQ9BVJ6 771 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 MTMR12Q9C0I1 747 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 DRC3Q9H069 523 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 WDR13Q9H1Z4 485 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CLSTN2Q9H4D0 955 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SLA2Q9H6Q3 261 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 FGF22Q9HCT0 170 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 FANCFQ9NPI8 374 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 TBC1D22BQ9NU19 505 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ZDHHC18Q9NUE0 388 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 VPS18Q9P253 973 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 LARSQ9P2J5 1176 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SUCLA2Q9P2R7 463 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ANKMY1Q9P2S6 941 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ATXN10Q9UBB4 475 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ADD3Q9UEY8 706 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 XPO7Q9UIA9 1087 aaKnown RBP1.96□□□□□ -2.1
HMGB1-208ENST00000490788 LNPEPQ9UIQ6 1025 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 KIAA1257Q9ULG3 409 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 FAM169AQ9Y6X4 670 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 MGAMO43451 1857 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 RALGAPA2Q2PPJ7 1873 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 SPEGQ15772 3267 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 TEX15Q9BXT5 2789 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ABCC12Q96J65 1359 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 CFAP46Q8IYW2 2715 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 WDR87Q6ZQQ6 2873 aa1.96□□□□□ -2.1
HMGB1-208ENST00000490788 ARPC4-TTLL3A0A0A6YYG9 625 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 IGLV9-49A0A0B4J1Y8 123 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 LOC105371267A0A1B0GV96 52 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 A0A1W2PQ67 120 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 A0A1W2PRQ8 180 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 LNP1A1A4G5 178 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 HYKKA2RU49 373 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 GTPBP10A4D1E9 387 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 C2orf81A6NN90 581 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 KRTAP9-6A8MVA2 160 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 AP3B1O00203 1094 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 NR5A2O00482 541 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF197O14709 1029 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 TO15178 435 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ZW10O43264 779 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ZSCAN12O43309 604 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 XRCC3O43542 346 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ACSL4O60488 711 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 DOK2O60496 412 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 NMT2O60551 498 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF254O75437 659 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CDC123O75794 336 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PENKP01210 267 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 SLC4A1P02730 911 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 RPN1P04843 607 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CLTAP09496 248 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 LINGO3P0C6S8 592 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF883P0CG24 379 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CSH1P0DML2 217 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CSH2P0DML3 217 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 MYBL1P10243 752 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PDHBP11177 359 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CEACAM1P13688 526 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PRKACBP22694 351 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ANXA13P27216 316 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 TMOD1P28289 359 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ATP5DP30049 168 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ALDH3A1P30838 453 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 SLC6A6P31641 620 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 GABRA5P31644 462 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 KIF5BP33176 963 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 HSPA4P34932 840 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 RXRGP48443 463 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 SUOXP51687 545 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 BMXP51813 675 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PNLIPRP2P54317 469 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 HERV-K104P61576 105 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CDK3Q00526 305 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PLOD1Q02809 727 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 GBE1Q04446 702 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 KLC1Q07866 573 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 GPR17Q13304 367 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 TUBB2AQ13885 445 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 LY6DQ14210 128 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 IRF3Q14653 427 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 NTRK2Q16620 822 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 SGSM1Q2NKQ1 1148 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 DUSP28Q4G0W2 176 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 C14orf177Q52M58 125 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 HSP90AA5PQ58FG0 334 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CFAP157Q5JU67 520 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC122Q5T0U0 273 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 MFSD14CQ5VZR4 134 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 SNRNP48Q6IEG0 339 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 NEK5Q6P3R8 708 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 TRIM65Q6PJ69 517 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 BZW1Q7L1Q6 419 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 SLC16A9Q7RTY1 509 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 LDB1Q86U70 411 aaPredicted RBP1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms