RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 LANCL3Q6ZV70 420 aa14.71□□□□□ -0.05
HMGA1-206ENST00000478214 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.71□□□□□ -0.051e-6■■■■■ 56.2
HMGA1-206ENST00000478214 GAL3ST3Q96A11 431 aa14.71□□□□□ -0.05
HMGA1-206ENST00000478214 TBC1D20Q96BZ9 403 aa14.71□□□□□ -0.05
HMGA1-206ENST00000478214 MS4A6EQ96DS6 147 aa14.71□□□□□ -0.05
HMGA1-206ENST00000478214 SEC16BQ96JE7 1060 aa14.71□□□□□ -0.05
HMGA1-206ENST00000478214 SMAD5Q99717 465 aaKnown RBP14.71□□□□□ -0.05
HMGA1-206ENST00000478214 MRPL57Q9BQC6 102 aaKnown RBP14.71□□□□□ -0.05
HMGA1-206ENST00000478214 CCDC77Q9BR77 488 aa14.71□□□□□ -0.05
HMGA1-206ENST00000478214 MRPL46Q9H2W6 279 aaKnown RBP14.71□□□□□ -0.05
HMGA1-206ENST00000478214 ZNF552Q9H707 407 aaPredicted RBP14.71□□□□□ -0.05
HMGA1-206ENST00000478214 LANCL2Q9NS86 450 aa14.71□□□□□ -0.05
HMGA1-206ENST00000478214 ANAPC2Q9UJX6 822 aa14.71□□□□□ -0.05
HMGA1-206ENST00000478214 ZNF451Q9Y4E5 1061 aa14.71□□□□□ -0.05
HMGA1-206ENST00000478214 PCDHGB7Q9Y5F8 929 aa14.71□□□□□ -0.05
HMGA1-206ENST00000478214 TNPO3Q9Y5L0 923 aaKnown RBP14.71□□□□□ -0.05
HMGA1-206ENST00000478214 LOC102723996A0A087X1L8 192 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 IGHV1-45A0A0A0MS14 117 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 NSG1A0A0A6YYJ2 146 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 A0A1W2PQ72 361 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 GOLGA8RI6L899 631 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 PCDH17O14917 1159 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 SMIM24O75264 130 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 FHP07954 510 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 SBK3P0C264 359 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 PCNAP12004 261 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 PLA2G16P53816 162 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 BTN3A2P78410 334 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 GTF2H2Q13888 395 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 PCOLCEQ15113 449 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 ADPRMQ3LIE5 342 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 VWA5B1Q5TIE3 1220 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 GRHL2Q6ISB3 625 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 GTF2H2CQ6P1K8 395 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 MED27Q6P2C8 311 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 ATG14Q6ZNE5 492 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 NDUFAF7Q7L592 441 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 GOLGA7Q7Z5G4 137 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 MYLK4Q86YV6 388 aaPredicted RBP14.7□□□□□ -0.06
HMGA1-206ENST00000478214 LAS2Q8IYD9 372 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 TMEM151AQ8N4L1 468 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 AMER2Q8N7J2 671 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 OR7G3Q8NG95 312 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 MZB1Q8WU39 189 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 METTL21AQ8WXB1 218 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 UBE2E3Q969T4 207 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 OR1F2PQ96R84 312 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 F2RL3Q96RI0 385 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 REXO4Q9GZR2 422 aaKnown RBP14.7□□□□□ -0.06
HMGA1-206ENST00000478214 ZNF700Q9H0M5 742 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 ACTR8Q9H981 624 aa14.7□□□□□ -0.06
HMGA1-206ENST00000478214 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.7□□□□□ -0.06
HMGA1-206ENST00000478214 V9GYY5 206 aaPredicted RBP14.7□□□□□ -0.06
HMGA1-206ENST00000478214 SPENQ96T58 3664 aaKnown RBP14.7□□□□□ -0.06
HMGA1-206ENST00000478214 HELZ2Q9BYK8 2649 aaKnown RBP14.7□□□□□ -0.06
HMGA1-206ENST00000478214 IGHV3-20A0A0C4DH32 117 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 FOXO6A8MYZ6 492 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 E2F3O00716 465 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 B4GALT2O60909 372 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 SH3BGRLO75368 114 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 IL10P22301 178 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 SLCO1A2P46721 670 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 RHAGQ02094 409 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 RUNX2Q13950 521 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 NADK2Q4G0N4 442 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 METTL2BQ6P1Q9 378 aaKnown RBP14.69□□□□□ -0.06
HMGA1-206ENST00000478214 ABHD17CQ6PCB6 329 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 CA13Q8N1Q1 262 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 OR2L5Q8NG80 312 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 ZNF473Q8WTR7 871 aaKnown RBP14.69□□□□□ -0.06
HMGA1-206ENST00000478214 TSLPQ969D9 159 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 THOC3Q96J01 351 aaKnown RBP14.69□□□□□ -0.06
HMGA1-206ENST00000478214 FAR2Q96K12 515 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 QRFPRQ96P65 431 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 LHPPQ9H008 270 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 EPN3Q9H201 632 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 IPPKQ9H8X2 491 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 CLK4Q9HAZ1 481 aaKnown RBP14.69□□□□□ -0.06
HMGA1-206ENST00000478214 ZBTB20Q9HC78 741 aaPredicted RBP14.69□□□□□ -0.06
HMGA1-206ENST00000478214 PRM3Q9NNZ6 103 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 TMEM216Q9P0N5 145 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 TMCO1Q9UM00 188 aa14.69□□□□□ -0.06
HMGA1-206ENST00000478214 TNRC6AQ8NDV7 1962 aaKnown RBP14.69□□□□□ -0.06
HMGA1-206ENST00000478214 A0A1W2PPM1 405 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 SMIM23A6NLE4 172 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 FAM227AF5H4B4 570 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 STX16-NPEPL1H3BU86 382 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 PYCARD-AS1I3L0S3 204 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 STX16O14662 325 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 KLHL41O60662 606 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 DPM1O60762 260 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 ALPPP05187 535 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 CELA2AP08217 269 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 CYC1P08574 325 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 PYGBP11216 843 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 RNH1P13489 461 aaKnown RBP14.68□□□□□ -0.06
HMGA1-206ENST00000478214 HSD17B3P37058 310 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 CASRP41180 1078 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 PIK3CGP48736 1102 aa14.68□□□□□ -0.06
HMGA1-206ENST00000478214 ABRAXAS2Q15018 415 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms