RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CREG2Q8IUH2 290 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SPPL2CQ8IUH8 684 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PDIK1LQ8N165 341 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 KIF2BQ8N4N8 673 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLC5A8Q8N695 610 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 GPATCH11Q8N954 259 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ACBD4Q8NC06 268 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TRPV3Q8NET8 790 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TRIM51Q9BSJ1 452 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 RBCK1Q9BYM8 510 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CDCP1Q9H5V8 836 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ANKRD10Q9NXR5 420 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PPIEQ9UNP9 301 aaKnown RBP11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLC22A14Q9Y267 594 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 AKAP9Q99996 3911 aa11.48□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CELSR1Q9NYQ6 3014 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CCDC168Q8NDH2 2452 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 EML6Q6ZMW3 1958 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 FAM227AF5H4B4 570 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CDC7O00311 574 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZSCAN12O43309 604 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ASNA1O43681 348 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 GUCA1CO95843 209 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 UQCRHP07919 91 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CD46P15529 392 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TCP1P17987 556 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 JAK1P23458 1154 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 HTR1EP28566 365 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 EEF1DP29692 281 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLC6A12P48065 614 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TAS2R39P59534 338 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SKP1P63208 163 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 RBPJQ06330 500 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 RGS1Q08116 209 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CDSNQ15517 529 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 HP1BP3Q5SSJ5 553 aaPredicted RBP11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 GALNTL5Q7Z4T8 443 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MCEMP1Q8IX19 187 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SRRM1Q8IYB3 904 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NKAPQ8N5F7 415 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TMEM178AQ8NBL3 297 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 APCDD1LQ8NCL9 501 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ANKRD49Q8WVL7 239 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PTCHD1Q96NR3 888 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 KCNF1Q9H3M0 494 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NECTIN3Q9NQS3 549 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 KLHL1Q9NR64 748 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 LRFN1Q9P244 771 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SUCOQ9UBS9 1254 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TINAGQ9UJW2 476 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CHMP2BQ9UQN3 213 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ASB1Q9Y576 335 aa11.47□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 F8P00451 2351 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SAGE2PA6NJ88 616 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ADAM10O14672 748 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NDC80O14777 642 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NME2P1O60361 137 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 B4GALT2O60909 372 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SEC31AO94979 1220 aaKnown RBP11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 RNH1P13489 461 aaKnown RBP11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MAOAP21397 527 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 NME2P22392 152 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TPP2P29144 1249 aaPredicted RBP11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 HNMTP50135 292 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 HLCSP50747 726 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TAS2R50P59544 299 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 RAB8AP61006 207 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ALDH6A1Q02252 535 aaKnown RBP11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MGAT5Q09328 741 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TERF2Q15554 542 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ADPRMQ3LIE5 342 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 SLCO4C1Q6ZQN7 724 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 FGD2Q7Z6J4 655 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CEP97Q8IW35 865 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CA13Q8N1Q1 262 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TBC1D19Q8N5T2 526 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 HORMAD2Q8N7B1 307 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 RHBDF1Q96CC6 855 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CFAP36Q96G28 342 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 TSNARE1Q96NA8 513 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 AIF1LQ9BQI0 150 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 CHST11Q9NPF2 352 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PPANQ9NQ55 473 aaKnown RBP11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 PRDM9Q9NQV7 894 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 ZFATQ9P243 1243 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 MEMO1Q9Y316 297 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 OARD1Q9Y530 152 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 KCNE2Q9Y6J6 123 aa11.46□□□□□ -0.57
MSH5-SAPCD1-205ENST00000476085 LRIT2A6NDA9 550 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 URADA6NGE7 173 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 NPIPA5E9PKD4 350 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TGFBR3LH3BV60 316 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PRAMEF4O60810 478 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SLC25A12O75746 678 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SERPIND1P05546 499 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 C1GALT1C1LP0DN25 315 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PTGER4P35408 488 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 GGT5P36269 586 aa11.45□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CYB561P49447 251 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms