RNA–Protein interactions for RNA: ENST00000473924.1

DDX56-209, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-209ENST00000473924 WDR54Q9H977 334 aa11.77□□□□□ -0.53
DDX56-209ENST00000473924 COPS7BQ9H9Q2 264 aaPredicted RBP11.77□□□□□ -0.53
DDX56-209ENST00000473924 SSU72Q9NP77 194 aaKnown RBP11.77□□□□□ -0.53
DDX56-209ENST00000473924 MKKSQ9NPJ1 570 aaPredicted RBP11.77□□□□□ -0.53
DDX56-209ENST00000473924 HCN3Q9P1Z3 774 aa11.77□□□□□ -0.53
DDX56-209ENST00000473924 CTSFQ9UBX1 484 aa11.77□□□□□ -0.53
DDX56-209ENST00000473924 CELSR3Q9NYQ7 3312 aa11.77□□□□□ -0.53
DDX56-209ENST00000473924 FER1L5A0AVI2 2057 aa11.77□□□□□ -0.53
DDX56-209ENST00000473924 USP24Q9UPU5 2620 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 A0A0G2JN53 185 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 TRIM13O60858 407 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 CNOT3O75175 753 aaKnown RBP11.76□□□□□ -0.53
DDX56-209ENST00000473924 KLF7O75840 302 aaPredicted RBP11.76□□□□□ -0.53
DDX56-209ENST00000473924 OR4F21O95013 312 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 RECKO95980 971 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 B3GALT4O96024 378 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 ZGLP1P0C6A0 271 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 HMOX2P30519 316 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 ALDH3A1P30838 453 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 OTX2P32243 289 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 NEK2P51955 445 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 RAP1GDS1P52306 607 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 PKNOX1P55347 436 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 BTN3A2P78410 334 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 IL10RAQ13651 578 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 SSPNQ14714 243 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 UGT8Q16880 541 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 GGTA1PQ4G0N0 100 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 TMEM35AQ53FP2 167 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 SGO1Q5FBB7 561 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 VWA2Q5GFL6 755 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 TNFAIP8L3Q5GJ75 292 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 ATP1A1-AS1Q5TC04 95 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 MFSD4BQ5TF39 518 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 FRG2Q64ET8 278 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 LETMD1Q6P1Q0 360 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 RNF175Q8N4F7 328 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 AFAP1L2Q8N4X5 818 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 GOLGA6L1Q8N7Z2 621 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 SRFBP1Q8NEF9 429 aaKnown RBP11.76□□□□□ -0.53
DDX56-209ENST00000473924 OR51Q1Q8NH59 317 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 FRG2BQ96QU4 278 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 F2RL3Q96RI0 385 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 ZNF382Q96SR6 550 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 MS4A8Q9BY19 250 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 GSTO2Q9H4Y5 243 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 PRORYQ9H606 182 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 TMBIM4Q9HC24 238 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 MID1IP1Q9NPA3 183 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 DMRT3Q9NQL9 472 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 C14orf105Q9NVL8 296 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 TRPS1Q9UHF7 1281 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 SNX6Q9UNH7 406 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 TSC22D4Q9Y3Q8 395 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 SEC16AO15027 2179 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 SCN3AQ9NY46 2000 aa11.76□□□□□ -0.53
DDX56-209ENST00000473924 A0A1B0GTL3 188 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 VSTM2BA6NLU5 285 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 MAGEB17A8MXT2 336 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 SAP18O00422 153 aaKnown RBP11.75□□□□□ -0.53
DDX56-209ENST00000473924 TM9SF1O15321 606 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 B3GALT2O43825 422 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 CRCPO75575 148 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 ZWINTO95229 277 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 SMIM10L1P0DMW3 83 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 PTX3P26022 381 aaPredicted RBP11.75□□□□□ -0.53
DDX56-209ENST00000473924 XCR1P46094 333 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 FOXL2P58012 376 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 MAGOHP61326 146 aaKnown RBP11.75□□□□□ -0.53
DDX56-209ENST00000473924 RPS13P62277 151 aaKnown RBP11.75□□□□□ -0.53
DDX56-209ENST00000473924 OLR1P78380 273 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 KLC1Q07866 573 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 ADPRMQ3LIE5 342 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 CRTC2Q53ET0 693 aaPredicted RBP11.75□□□□□ -0.53
DDX56-209ENST00000473924 C10orf62Q5T681 223 aaPredicted RBP11.75□□□□□ -0.53
DDX56-209ENST00000473924 KHDRBS2Q5VWX1 349 aaKnown RBP11.75□□□□□ -0.53
DDX56-209ENST00000473924 FRMD7Q6ZUT3 714 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 RAB43Q86YS6 212 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 CDYL2Q8N8U2 506 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 OR5T3Q8NGG3 340 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 PPP1R14CQ8TAE6 165 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 WDR20Q8TBZ3 569 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 METTL6Q8TCB7 284 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 SNRNP27Q8WVK2 155 aaKnown RBP11.75□□□□□ -0.53
DDX56-209ENST00000473924 SELENOMQ8WWX9 145 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 PEX11GQ96HA9 241 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 SMIM10Q96HG1 83 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 CATSPER2Q96P56 530 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 KCNC2Q96PR1 638 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 SPSB2Q99619 263 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 CRB3Q9BUF7 120 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 MECRQ9BV79 373 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 ROGDIQ9GZN7 287 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 AICDAQ9GZX7 198 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 OR51B5Q9H339 312 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 POLHQ9Y253 713 aa11.75□□□□□ -0.53
DDX56-209ENST00000473924 IGLV3-12A0A075B6K2 115 aa11.74□□□□□ -0.53
DDX56-209ENST00000473924 C4orf51C9J302 202 aa11.74□□□□□ -0.53
DDX56-209ENST00000473924 H3BQF6 201 aa11.74□□□□□ -0.53
DDX56-209ENST00000473924 PSMD12O00232 456 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms