RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ACTN3Q08043 901 aaPredicted RBP17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 OR1C1Q15619 314 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 CAPN12Q6ZSI9 719 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 SLC5A8Q8N695 610 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 TRPV3Q8NET8 790 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 RHBDF1Q96CC6 855 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 SCMH1Q96GD3 660 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 PDLIM2Q96JY6 352 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 EGFL8Q99944 293 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 UTP23Q9BRU9 249 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 GPAMQ9HCL2 828 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 NSMCE4AQ9NXX6 385 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 CTNNAL1Q9UBT7 734 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 SEC14L3Q9UDX4 400 aa17.63■□□□□ 0.41
CCDC88B-206ENST00000473405 NCOA6Q14686 2063 aaPredicted RBP17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 TCRBV16S1A1N1A0A5B0 115 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 GABRR3A8MPY1 467 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 PRMT3O60678 531 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 NEURL1O76050 574 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 WDR47O94967 919 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 SERPINA6P08185 405 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 MYBL2P10244 700 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 RBBP5Q15291 538 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 TOR1AIP1Q5JTV8 583 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 SPINK14Q6IE38 97 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 SLCO4C1Q6ZQN7 724 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 FRA10AC1Q70Z53 315 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 LGI4Q8N135 537 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 PTCHD1Q96NR3 888 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 UNKQ9C0B0 810 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 DERL2Q9GZP9 239 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 CAB39LQ9H9S4 337 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 CLK4Q9HAZ1 481 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 KLHL1Q9NR64 748 aa17.62■□□□□ 0.41
CCDC88B-206ENST00000473405 ASPDHA6ND91 283 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 URADA6NGE7 173 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 SAGE2PA6NJ88 616 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 CXorf49A8MYA2 514 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 FAM227AF5H4B4 570 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 RNH1P13489 461 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 GNAZP19086 355 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 SSTR1P30872 391 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 HNRNPH1P31943 449 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 POU4F1Q01851 419 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 TGFBIQ15582 683 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 ZNF468Q5VIY5 522 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 CA13Q8N1Q1 262 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 SPATA6LQ8N4H0 392 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 NFAM1Q8NET5 270 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 TMEM79Q9BSE2 394 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 NECTIN3Q9NQS3 549 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 PRDM9Q9NQV7 894 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 COPG2Q9UBF2 871 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 RNF14Q9UBS8 474 aa17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 MTO1Q9Y2Z2 717 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-206ENST00000473405 NCF1BA6NI72 391 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 NCF1CA8MVU1 366 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 NDC80O14777 642 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 TBX6O95947 436 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 C1GALT1C1LP0DN25 315 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 NCF1P14598 390 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 TPP2P29144 1249 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 CA7P43166 264 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 TAS2R50P59544 299 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 SLBPQ14493 270 aaKnown RBP eCLIP17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 TMIGD1Q6UXZ0 262 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 TICAM1Q8IUC6 712 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 CYP4X1Q8N118 509 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 PYROXD1Q8WU10 500 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 ITLN2Q8WWU7 325 aaPredicted RBP17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 GAL3ST3Q96A11 431 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 CCDC120Q96HB5 630 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 FRMD6Q96NE9 622 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 DPH5Q9H2P9 285 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 RHBGQ9H310 441 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 SAYSD1Q9NPB0 183 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 GRHL1Q9NZI5 618 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 WHRNQ9P202 907 aa17.6■□□□□ 0.41
CCDC88B-206ENST00000473405 POLQO75417 2590 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 TRGV8A0A0C4DH27 118 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 TCRBV9S1A1TA0A576 114 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 PSMD12O00232 456 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 TAPBPO15533 448 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 PHGDHO43175 533 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 PRAMEF4O60810 478 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 C1QAP02745 245 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 EEF1DP29692 281 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 GGT5P36269 586 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 ILF2Q12905 390 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 OR4D1Q15615 310 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 PRAMEF9Q5VWM5 478 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 ADNP2Q6IQ32 1131 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 VN1R5Q7Z5H4 357 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 RPS19BP1Q86WX3 136 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 ZNF227Q86WZ6 799 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 ARMC10Q8N2F6 343 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 BBOF1Q8ND07 529 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 MS4A6EQ96DS6 147 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 GPR22Q99680 433 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms