RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 EPHA8P29322 1005 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MC5RP33032 325 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SHMT2P34897 504 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SREBF1P36956 1147 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 NSFP46459 744 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 GPR15P49685 360 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 NPY4RP50391 375 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TPMTP51580 245 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 AKR1D1P51857 326 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 HSF2Q03933 536 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MAMLD1Q13495 774 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 RIN1Q13671 783 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 GRM7Q14831 915 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 C16orf72Q14CZ0 275 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 EMC2Q15006 297 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 DECR1Q16698 335 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MST1LQ2TV78 715 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MPPE1Q53F39 396 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 NOMO2Q5JPE7 1267 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CELF3Q5SZQ8 465 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ARMC12Q5T9G4 340 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 DCAF12L1Q5VU92 463 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 IRAK1BP1Q5VVH5 260 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF470Q6ECI4 717 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TCEAL6Q6IPX3 200 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM83HQ6ZRV2 1179 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CYB5R4Q7L1T6 521 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CCDC117Q8IWD4 279 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 BEND7Q8N7W2 519 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 OR5AN1Q8NGI8 311 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 OR6X1Q8NH79 312 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 C22orf15Q8WYQ4 148 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TRIB2Q92519 343 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SNX19Q92543 992 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 PHYHIPQ92561 330 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 HAS2Q92819 552 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 UFD1Q92890 307 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM162AQ96A26 154 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SGTBQ96EQ0 304 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 DYDC2Q96IM9 177 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 BIRC8Q96P09 236 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 WWP1Q9H0M0 922 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 RNPEPL1Q9HAU8 725 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 PRDM8Q9NQV8 689 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 PRDM7Q9NQW5 492 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TLR8Q9NR97 1041 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 OLFML3Q9NRN5 406 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 DUSP22Q9NRW4 184 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TM7SF3Q9NS93 570 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 TREX1Q9NSU2 369 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 PARPBPQ9NWS1 579 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SLCO1C1Q9NYB5 712 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 KCMF1Q9P0J7 381 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 THEGQ9P2T0 379 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MGAT4CQ9UBM8 478 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 BCAP29Q9UHQ4 241 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC12A6Q9UHW9 1150 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 HAO1Q9UJM8 370 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 C3orf18Q9UK00 162 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 RAB23Q9ULC3 237 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 CDC14AQ9UNH5 594 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 PLA2G2DQ9UNK4 145 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 KCNK7Q9Y2U2 307 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 ACTL7AQ9Y615 435 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 FKBP7Q9Y680 259 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MROH7-TTC4A0A0A0MT08 1334 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 MYH13Q9UKX3 1938 aa4.62□□□□□ -1.67
CCDC88A-209ENST00000456975 PRSS29PA6NIE9 313 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 LGALS8O00214 317 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ADAMDEC1O15204 470 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MAGEB2O15479 319 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 DNPH1O43598 174 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 RECQL5O94762 991 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 YES1P07947 543 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 GIMD1P0DJR0 217 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 PIM1P11309 404 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 APEX1P27695 318 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CST5P28325 142 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 HSD11B1P28845 292 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 YWHABP31946 246 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 TPTEP56180 551 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 RBX1P62877 108 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 IL13RA1P78552 427 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CCZ1BP86790 482 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CCZ1P86791 482 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 DEFA6Q01524 100 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 FOXM1Q08050 763 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ACSM1Q08AH1 577 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SIGLEC14Q08ET2 396 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ILF2Q12905 390 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 PPIGQ13427 754 aaKnown RBP eCLIP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 TFDP1Q14186 410 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC36A3Q495N2 470 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 FASTKD1Q53R41 847 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 KRT39Q6A163 491 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 NADSYN1Q6IA69 706 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CDC42EP5Q6NZY7 148 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 FBXO42Q6P3S6 717 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 LIPIQ6XZB0 460 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC39A5Q6ZMH5 540 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms