RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 RABL3Q5HYI8 236 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 CPTPQ5TA50 214 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 OR4C11Q6IEV9 310 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 FAM180BQ6P0A1 224 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 TRIM40Q6P9F5 258 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 PGM2L1Q6PCE3 622 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 HACD2Q6Y1H2 254 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 ZNF793Q6ZN11 406 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 ZBTB44Q8NCP5 570 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 HIPK4Q8NE63 616 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 OR8K5Q8NH50 307 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 ZCCHC10Q8TBK6 192 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 GTF2H4Q92759 462 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 RERGQ96A58 199 aaPredicted RBP11.87□□□□□ -0.51
CHMP3-204ENST00000409727 OR2A5Q96R48 311 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 ZFYVE21Q9BQ24 234 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 INPP5KQ9BT40 448 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 GTPBP2Q9BX10 602 aaKnown RBP11.87□□□□□ -0.51
CHMP3-204ENST00000409727 SEMA6CQ9H3T2 930 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 FAM60AQ9NP50 221 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 STARD5Q9NSY2 213 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 SIRT5Q9NXA8 310 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 PILRAQ9UKJ1 303 aa11.87□□□□□ -0.51
CHMP3-204ENST00000409727 EXO1Q9UQ84 846 aaKnown RBP11.87□□□□□ -0.51
CHMP3-204ENST00000409727 PI4KAP42356 2102 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 ADAMTS9Q9P2N4 1935 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 MDC1Q14676 2089 aaKnown RBP11.86□□□□□ -0.51
CHMP3-204ENST00000409727 WDFY4Q6ZS81 3184 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 H0YGG7 62 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 HCRTR1O43613 425 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 TMPRSS11DO60235 418 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 PRMT3O60678 531 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 SLC35G6P0C7Q6 338 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 SLC6A2P23975 617 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 ALDH9A1P49189 494 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 ARF3P61204 181 aaPredicted RBP11.86□□□□□ -0.51
CHMP3-204ENST00000409727 STXBP1P61764 594 aaKnown RBP11.86□□□□□ -0.51
CHMP3-204ENST00000409727 SNRPNP63162 240 aaKnown RBP11.86□□□□□ -0.51
CHMP3-204ENST00000409727 RGS1Q08116 209 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 ZNF528Q3MIS6 628 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 GTDC1Q4AE62 458 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 TMEM35AQ53FP2 167 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 C6orf163Q5TEZ5 329 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 PEAR1Q5VY43 1037 aaPredicted RBP11.86□□□□□ -0.51
CHMP3-204ENST00000409727 C8orf82Q6P1X6 216 aaPredicted RBP11.86□□□□□ -0.51
CHMP3-204ENST00000409727 DLEU7Q6UYE1 221 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 KIAA2013Q8IYS2 634 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 MINDY1Q8N5J2 469 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 OR2L5Q8NG80 312 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 SAP25Q8TEE9 199 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 TRAPPC9Q96Q05 1148 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 HOPXQ9BPY8 73 aaPredicted RBP11.86□□□□□ -0.51
CHMP3-204ENST00000409727 GPATCH1Q9BRR8 931 aaKnown RBP11.86□□□□□ -0.51
CHMP3-204ENST00000409727 DUSP26Q9BV47 211 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 PIF1Q9H611 641 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 RMND5AQ9H871 391 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 MYNNQ9NPC7 610 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 ANKMY1Q9P2S6 941 aa11.86□□□□□ -0.51
CHMP3-204ENST00000409727 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.86□□□□□ -0.51
CHMP3-204ENST00000409727 PRORSD1PA6NEY8 169 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 NME4O00746 187 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 NUDT21O43809 227 aaKnown RBP11.85□□□□□ -0.51
CHMP3-204ENST00000409727 DFNA5O60443 496 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 CPSF4O95639 269 aaKnown RBP11.85□□□□□ -0.51
CHMP3-204ENST00000409727 C9P02748 559 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 ZNF888P0CJ79 500 aaPredicted RBP11.85□□□□□ -0.51
CHMP3-204ENST00000409727 GLB1P16278 677 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 CERS1P27544 350 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 GSTM2P28161 218 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 CDKN2CP42773 168 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 VSX2P58304 361 aaPredicted RBP11.85□□□□□ -0.51
CHMP3-204ENST00000409727 MTPNP58546 118 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 BTN3A2P78410 334 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 SRSF11Q05519 484 aaKnown RBP11.85□□□□□ -0.51
CHMP3-204ENST00000409727 PWP1Q13610 501 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 MUM1Q2TAK8 710 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 ZNF385BQ569K4 471 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 FAM71E1Q6IPT2 247 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 NANOGP8Q6NSW7 305 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 ABHD17CQ6PCB6 329 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 USP53Q70EK8 1073 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 NET1Q7Z628 596 aaPredicted RBP11.85□□□□□ -0.51
CHMP3-204ENST00000409727 SLC15A3Q8IY34 581 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 CLECL1Q8IZS7 167 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 DPP10Q8N608 796 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 C19orf47Q8N9M1 422 aaKnown RBP11.85□□□□□ -0.51
CHMP3-204ENST00000409727 STARD8Q92502 1023 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 CIDECQ96AQ7 238 aaPredicted RBP11.85□□□□□ -0.51
CHMP3-204ENST00000409727 MIEF2Q96C03 454 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 PPCDCQ96CD2 204 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 QRFPRQ96P65 431 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 KCNC2Q96PR1 638 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 PRPF18Q99633 342 aaKnown RBP11.85□□□□□ -0.51
CHMP3-204ENST00000409727 CCDC3Q9BQI4 270 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 SLC6A16Q9GZN6 736 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 REEP4Q9H6H4 257 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 NANOGQ9H9S0 305 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 CAPN10Q9HC96 672 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 MIEF1Q9NQG6 463 aa11.85□□□□□ -0.51
CHMP3-204ENST00000409727 SLC6A13Q9NSD5 602 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms