RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 AADATQ8N5Z0 425 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 COX18Q8N8Q8 333 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 GLIS3Q8NEA6 775 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 GLYATL1Q969I3 302 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 SLC22A4Q9H015 551 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 C6orf106Q9H6K1 298 aaPredicted RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 UGT1A7Q9HAW7 530 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 UGT1A10Q9HAW8 530 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 UGT1A8Q9HAW9 530 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 HIF3AQ9Y2N7 669 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 DPPA5A6NC42 116 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 EEF1E1-BLOC1S5C9J1V9 151 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 H0YJX3 145 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 EEF1E1O43324 174 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ERI3O43414 337 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 UNC5CO95185 931 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 C9P02748 559 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ETS1P14921 441 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CRATP43155 626 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 GPLD1P80108 840 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 DPYSQ14117 519 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 EML3Q32P44 896 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 C14orf28Q4W4Y0 310 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 FGD3Q5JSP0 725 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ISLR2Q6UXK2 745 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 Q6ZS52 159 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 NYAP1Q6ZVC0 841 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ZBTB46Q86UZ6 589 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CADM2Q8N3J6 435 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 EXOSC8Q96B26 276 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 SPOCK3Q9BQ16 436 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 GBA3Q9H227 469 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ACP6Q9NPH0 428 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 RASSF1Q9NS23 344 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PPP4R1LQ9P1A2 415 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ADGRE2Q9UHX3 823 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 A0A0D9SEW6 157 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 C1orf196B1AJZ1 125 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 DDX3XO00571 662 aaKnown RBP eCLIP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 XKRYO14609 159 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ITGA2BP08514 1039 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 BGNP21810 368 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 DCDC1P59894 354 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PRR5P85299 388 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PLP2Q04941 152 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 IQCCQ4KMZ1 466 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CYP2R1Q6VVX0 501 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ETFBKMTQ8IXQ9 262 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ZZZ3Q8IYH5 903 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 OR8K3Q8NH51 312 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PTCD2Q8WV60 388 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 TMEM27Q9HBJ8 222 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CD93Q9NPY3 652 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 HMGXB4Q9UGU5 601 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CA5BQ9Y2D0 317 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 NUP188Q5SRE5 1749 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 NUP98P52948 1817 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 BTNL10A8MVZ5 291 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PRAMEF11O60813 436 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PGLSO95336 258 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CRYABP02511 175 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ESR1P03372 595 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 C1SP09871 688 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CD44P16070 742 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PVALBP20472 110 aaPredicted RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CDH5P33151 784 aaPredicted RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 DPYSL3Q14195 570 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 FASTKQ14296 549 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 MPP7Q5T2T1 576 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 TCEAL6Q6IPX3 200 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 HFE2Q6ZVN8 426 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 RTN4RL1Q86UN2 441 aaPredicted RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 SLC41A1Q8IVJ1 513 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ASCC1Q8N9N2 400 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 OR7G2Q8NG99 324 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ZFPM2Q8WW38 1151 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF71Q9NQZ8 489 aaPredicted RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PLAGL1Q9UM63 463 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 BOKQ9UMX3 212 aaPredicted RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 RUVBL1Q9Y265 456 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 DISC1C4P0D8 188 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 RAD1O60671 282 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 ABLIM3O94929 683 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 AP2A1O95782 977 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 NPPAP01160 153 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 NR2F6P10588 404 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 GNAZP19086 355 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 UQCRC1P31930 480 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 IDH2P48735 452 aaKnown RBP7.04□□□□□ -1.28
SCN9A-202ENST00000409435 NME5P56597 212 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 MAB21L1Q13394 359 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 LARS2Q15031 903 aaKnown RBP7.04□□□□□ -1.28
SCN9A-202ENST00000409435 ANXA8L1Q5VT79 327 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 AGAP7PQ5VUJ5 663 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 WDR5BQ86VZ2 330 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 CEP97Q8IW35 865 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 UBQLNLQ8IYU4 475 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 PYROXD2Q8N2H3 581 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 CNEP1R1Q8N9A8 125 aa7.04□□□□□ -1.28
SCN9A-202ENST00000409435 CADM4Q8NFZ8 388 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms