RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 VPS4AQ9UN37 437 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 PCDHB11Q9Y5F2 797 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 DOCK6Q96HP0 2047 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 TRIM64BA6NI03 449 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 PTGES3LE9PB15 166 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 H0Y858 1186 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 LZTS3O60299 673 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-204ENST00000392003 LAMP1P11279 417 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 DNAJA1P31689 397 aaKnown RBP9.28□□□□□ -0.92
COL6A3-204ENST00000392003 TMBIM6P55061 237 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 LRRC74AQ0VAA2 488 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 ZC3H12BQ5HYM0 836 aaKnown RBP9.28□□□□□ -0.92
COL6A3-204ENST00000392003 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.28□□□□□ -0.92
COL6A3-204ENST00000392003 FAM205BPQ63HN1 556 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 TMEM215Q68D42 235 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 GALNT5Q7Z7M9 940 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 CFAP206Q8IYR0 622 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 CLECL1Q8IZS7 167 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 CHDHQ8NE62 594 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-204ENST00000392003 WDR20Q8TBZ3 569 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 TBC1D20Q96BZ9 403 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 FCRL1Q96LA6 429 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 AMBRA1Q9C0C7 1298 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 IL1RAPQ9NPH3 570 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 SCN3BQ9NY72 215 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 KCNN3Q9UGI6 736 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 SAMHD1Q9Y3Z3 626 aaKnown RBP9.28□□□□□ -0.92
COL6A3-204ENST00000392003 PLXNB3Q9ULL4 1909 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 A0A1W2PPW3 197 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 SLC5A10A0PJK1 596 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 SCAMP2O15127 329 aaKnown RBP9.28□□□□□ -0.92
COL6A3-204ENST00000392003 MOSPD3O75425 235 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 SCO1O75880 301 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 NFATC1O95644 943 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 CPNE6O95741 557 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 BCL10O95999 233 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 GPX2P18283 190 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 EFNA1P20827 205 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-204ENST00000392003 FPR1P21462 350 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 GSTM2P28161 218 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 PTPN6P29350 595 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 HOXA9P31269 272 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 MMP12P39900 470 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 GPR1P46091 355 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 MAPK10P53779 464 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 TRMT11Q7Z4G4 463 aaKnown RBP9.28□□□□□ -0.92
COL6A3-204ENST00000392003 TECPR1Q7Z6L1 1165 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 ZZZ3Q8IYH5 903 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 ATG16L2Q8NAA4 619 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 OR56A3Q8NH54 315 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 RAB2BQ8WUD1 216 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 TPD52L3Q96J77 140 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 MRGPRX3Q96LB0 322 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 APOL4Q9BPW4 351 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 SPATA9Q9BWV2 254 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 MARK1Q9P0L2 795 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 CDH7Q9ULB5 785 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 TPRKBQ9Y3C4 175 aa9.28□□□□□ -0.92
COL6A3-204ENST00000392003 ATE1O95260 518 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 NTRK1P04629 796 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 POU2F1P14859 743 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 CD22P20273 847 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 IMPA1P29218 277 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 GRSF1Q12849 480 aaKnown RBP eCLIP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 HKDC1Q2TB90 917 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 ANKRD26P1Q6NSI1 321 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 NIPAL1Q6NVV3 410 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 EIF3MQ7L2H7 374 aaKnown RBP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 NPAS3Q8IXF0 933 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 C10orf111Q8N326 155 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 PIK3C3Q8NEB9 887 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 OR7G3Q8NG95 312 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 OR13F1Q8NGS4 319 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 HUS1BQ8NHY5 278 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 SP7Q8TDD2 431 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 NODALQ96S42 347 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 TBC1D23Q9NUY8 699 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 PDP1Q9P0J1 537 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 BTNL2Q9UIR0 455 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 FZD4Q9ULV1 537 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 PCDH7O60245 1069 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 KCNK5O95279 499 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 CTSLP07711 333 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 POLR2CP19387 275 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 FSHRP23945 695 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 PIGAP37287 484 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 RPS13P62277 151 aaKnown RBP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 ELP6Q0PNE2 266 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 SIM2Q14190 667 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF691Q5VV52 312 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 RAET1GQ6H3X3 334 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 PDE12Q6L8Q7 609 aaKnown RBP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 PARS2Q7L3T8 475 aaKnown RBP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 KIAA0907Q7Z7F0 614 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-204ENST00000392003 TMEM179BQ7Z7N9 219 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 CACUL1Q86Y37 369 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 CPA6Q8N4T0 437 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 OR4A15Q8NGL6 344 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 OR8D1Q8WZ84 308 aa9.27□□□□□ -0.93
COL6A3-204ENST00000392003 HSH2DQ96JZ2 352 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms