RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 AHSPQ9NZD4 102 aa13.15□□□□□ -0.3
PTPRF-202ENST00000372405 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 DHRS12A0PJE2 317 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 C1orf226A1L170 272 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 TLR4O00206 839 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 RNASET2O00584 256 aaKnown RBP13.14□□□□□ -0.31
PTPRF-202ENST00000372405 CAPN5O15484 640 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-202ENST00000372405 CPSF4O95639 269 aaKnown RBP13.14□□□□□ -0.31
PTPRF-202ENST00000372405 NME1P15531 152 aaKnown RBP13.14□□□□□ -0.31
PTPRF-202ENST00000372405 GGT1P19440 569 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 GRK3P35626 688 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 AHRP35869 848 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 PLA2G16P53816 162 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 GAB1Q13480 694 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 OGFRL1Q5TC84 451 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-202ENST00000372405 GLYATQ6IB77 296 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 IKBIPQ70UQ0 350 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 ZNF761Q86XN6 746 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-202ENST00000372405 DCP2Q8IU60 420 aaKnown RBP13.14□□□□□ -0.31
PTPRF-202ENST00000372405 TMEFF1Q8IYR6 380 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 CLEC4FQ8N1N0 589 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 MFSD9Q8NBP5 474 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 FAM46DQ8NEK8 389 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 TTLQ8NG68 377 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 OR10G6Q8NH81 332 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 LRTOMTQ8WZ04 291 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 PHF12Q96QT6 1004 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 PRPF18Q99633 342 aaKnown RBP13.14□□□□□ -0.31
PTPRF-202ENST00000372405 SH3GL1Q99961 368 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 ABCG4Q9H172 646 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 MIR1-1HGQ9H1L0 117 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 DDX31Q9H8H2 851 aaKnown RBP13.14□□□□□ -0.31
PTPRF-202ENST00000372405 CCM2LQ9NUG4 571 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-202ENST00000372405 EVA1BQ9NVM1 165 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 ACTR10Q9NZ32 417 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 DLGAP2Q9P1A6 1054 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 SNX7Q9UNH6 387 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 MYO15AQ9UKN7 3530 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 OR2A25A4D2G3 310 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 OR5K4A6NMS3 321 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 CLIC1O00299 241 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 STAMBPO95630 424 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 CAPNS1P04632 268 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 MAGP20916 626 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 LSSP48449 732 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 MAPK12P53778 367 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 SNRPNP63162 240 aaKnown RBP13.14□□□□□ -0.31
PTPRF-202ENST00000372405 HMBOX1Q6NT76 420 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 ZNF621Q6ZSS3 439 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 VN1R4Q7Z5H5 301 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 IQCHQ86VS3 1027 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 NUDT13Q86X67 352 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 GOLM1Q8NBJ4 401 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 ZDHHC1Q8WTX9 485 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 DNAJC9Q8WXX5 260 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 SLC22A18Q96BI1 424 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 PPCDCQ96CD2 204 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 MS4A6EQ96DS6 147 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 C17orf62Q9BQA9 187 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 TRIM15Q9C019 465 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 TRIM4Q9C037 500 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 SLC6A16Q9GZN6 736 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 ARMC1Q9NVT9 282 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 MAGEL2Q9UJ55 1249 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 THADAQ6YHU6 1953 aa13.14□□□□□ -0.31
PTPRF-202ENST00000372405 A0A0A6YYD5 115 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 GSAPA4D1B5 854 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 FAM220BPB1ANY3 271 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 B4DGG1 531 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 TNFSF14O43557 240 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 CTSVO60911 334 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 TIPRLO75663 272 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 PDGFBP01127 241 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-202ENST00000372405 ENGP17813 658 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 PPP1CAP62136 330 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 HBA1P69905 142 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 KLC1Q07866 573 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 CYP51A1Q16850 503 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 SFT2D3Q587I9 215 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 ANXA8L1Q5VT79 327 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 IRAK1BP1Q5VVH5 260 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 FCRL6Q6DN72 434 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 OR4C11Q6IEV9 310 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 FAM180BQ6P0A1 224 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 FBXO42Q6P3S6 717 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 IZUMO2Q6UXV1 221 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 PAGE2Q7Z2X7 111 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 DGLUCYQ7Z3D6 616 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 R3HCC1LQ7Z5L2 792 aaKnown RBP13.13□□□□□ -0.31
PTPRF-202ENST00000372405 PROSER1Q86XN7 944 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 TICAM1Q8IUC6 712 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 UCN3Q969E3 161 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 MTERF3Q96E29 417 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 TEX10Q9NXF1 929 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-202ENST00000372405 SPASTQ9UBP0 616 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 ADAM29Q9UKF5 820 aa13.13□□□□□ -0.31
PTPRF-202ENST00000372405 SCN3AQ9NY46 2000 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 ELOVL7A1L3X0 281 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 PRAMEF10O60809 474 aa13.12□□□□□ -0.31
PTPRF-202ENST00000372405 ZCCHC18P0CG32 403 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms