RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 SPG11Q96JI7 2443 aa10.56□□□□□ -0.72
RTN3-204ENST00000354497 SNRNP200O75643 2136 aaKnown RBP10.55□□□□□ -0.72
RTN3-204ENST00000354497 A0A1B0GTH9 108 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 KRT87PA6NCN2 255 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 F8W8V4 182 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 H7C0S8 307 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 TFECO14948 347 aaPredicted RBP10.55□□□□□ -0.72
RTN3-204ENST00000354497 MAN1A2O60476 641 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 STK10O94804 968 aaKnown RBP10.55□□□□□ -0.72
RTN3-204ENST00000354497 TOXO94900 526 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 FKBP9O95302 570 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 HNRNPCP07910 306 aaKnown RBP eCLIP10.55□□□□□ -0.723e-6■■■□□ 17
RTN3-204ENST00000354497 HOXD4P09016 255 aaPredicted RBP10.55□□□□□ -0.72
RTN3-204ENST00000354497 CCR7P32248 378 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 SLC26A3P40879 764 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 EFNA3P52797 238 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 CTAG1AP78358 180 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 TFF3Q07654 80 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 MSLNQ13421 630 aaPredicted RBP10.55□□□□□ -0.72
RTN3-204ENST00000354497 PRTGQ2VWP7 1150 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 CNPY1Q3B7I2 92 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 DENND5AQ6IQ26 1287 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 UNC5DQ6UXZ4 953 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 CHERPQ8IWX8 916 aaKnown RBP10.55□□□□□ -0.72
RTN3-204ENST00000354497 RNF10Q8N5U6 811 aaKnown RBP10.55□□□□□ -0.72
RTN3-204ENST00000354497 GSDMBQ8TAX9 411 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 FAM57AQ8TBR7 257 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 RND1Q92730 232 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 RMND5BQ96G75 393 aaPredicted RBP10.55□□□□□ -0.72
RTN3-204ENST00000354497 ZNF317Q96PQ6 595 aaPredicted RBP10.55□□□□□ -0.72
RTN3-204ENST00000354497 SMR3AQ99954 134 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 DPH7Q9BTV6 452 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 TSSK1BQ9BXA7 367 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 HEMGNQ9BXL5 484 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 DLL4Q9NR61 685 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 ENAMQ9NRM1 1142 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 LRFN1Q9P244 771 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 N6AMT1Q9Y5N5 214 aa10.55□□□□□ -0.72
RTN3-204ENST00000354497 hCG_1818297A0A087WSY0 165 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 IQCF5A8MTL0 148 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 AKR1B10O60218 316 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 TJP3O95049 919 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 APOA4P06727 396 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 FOSL1P15407 271 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 COMTP21964 271 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 CMPK1P30085 196 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 ADSLP30566 484 aaPredicted RBP10.54□□□□□ -0.72
RTN3-204ENST00000354497 RFC3P40938 356 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 MEOX1P50221 254 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 YBX1P67809 324 aaKnown RBP10.54□□□□□ -0.72
RTN3-204ENST00000354497 CYLC2Q14093 348 aaPredicted RBP10.54□□□□□ -0.72
RTN3-204ENST00000354497 TMED2Q15363 201 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 RNFT1Q5M7Z0 435 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 DEPDC1Q5TB30 811 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 IL23RQ5VWK5 629 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 FOXB2Q5VYV0 432 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 PLAG1Q6DJT9 500 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 LRRC8BQ6P9F7 803 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 CPLX4Q7Z7G2 160 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 CDKL3Q8IVW4 592 aaPredicted RBP10.54□□□□□ -0.72
RTN3-204ENST00000354497 ZZZ3Q8IYH5 903 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 CLYBLQ8N0X4 340 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 AGGF1Q8N302 714 aaeCLIP10.54□□□□□ -0.72
RTN3-204ENST00000354497 SLC5A8Q8N695 610 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 LILRB4Q8NHJ6 448 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 LKAAEAR1Q8TD35 194 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 NANOS1Q8WY41 292 aaKnown RBP10.54□□□□□ -0.72
RTN3-204ENST00000354497 HDAC10Q969S8 669 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 RERGQ96A58 199 aaPredicted RBP10.54□□□□□ -0.72
RTN3-204ENST00000354497 EFHD2Q96C19 240 aaPredicted RBP10.54□□□□□ -0.72
RTN3-204ENST00000354497 MVB12AQ96EY5 273 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 TTC1Q99614 292 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 C19orf43Q9BQ61 176 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 FAM167BQ9BTA0 163 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 FAM129AQ9BZQ8 928 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 TGIF2Q9GZN2 237 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 VN1R1Q9GZP7 353 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 DRC3Q9H069 523 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 LZTFL1Q9NQ48 299 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 STOML1Q9UBI4 398 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 CAPN11Q9UMQ6 739 aa10.54□□□□□ -0.72
RTN3-204ENST00000354497 RPH3AQ9Y2J0 694 aaPredicted RBP10.54□□□□□ -0.72
RTN3-204ENST00000354497 A0A0U1RQJ8 604 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 FAM237BA0A1B0GVD1 139 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 SLC25A12O75746 678 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 STATHP02808 62 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 TCP1P17987 556 aaKnown RBP10.53□□□□□ -0.72
RTN3-204ENST00000354497 CTNNA2P26232 953 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 SLC1A1P43005 524 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 AVPR1BP47901 424 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 TAS2R50P59544 299 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 SLC18A3Q16572 532 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 CCSMST1Q4G0I0 132 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 SMUG1Q53HV7 270 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 RNF220Q5VTB9 566 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 TMEM198Q66K66 360 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 FBXO42Q6P3S6 717 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 DARS2Q6PI48 645 aaKnown RBP10.53□□□□□ -0.72
RTN3-204ENST00000354497 ANKRD37Q7Z713 158 aa10.53□□□□□ -0.72
RTN3-204ENST00000354497 BIVMQ86UB2 503 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms