RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 I3L1I5 382 aaPredicted RBP21.05■□□□□ 0.96
SDC3-202ENST00000339394 PLPP1O14494 284 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 DSCR3O14972 297 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 PDCD2Q16342 344 aaPredicted RBP21.05■□□□□ 0.96
SDC3-202ENST00000339394 PDSS2Q86YH6 399 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 METTL27Q8N6F8 245 aaPredicted RBP21.05■□□□□ 0.96
SDC3-202ENST00000339394 SRFBP1Q8NEF9 429 aaKnown RBP21.05■□□□□ 0.96
SDC3-202ENST00000339394 OR9A4Q8NGU2 314 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 MVB12AQ96EY5 273 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 FAR2Q96K12 515 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 GBP5Q96PP8 586 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 KCNC2Q96PR1 638 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 MRPL1Q9BYD6 325 aaKnown RBP21.05■□□□□ 0.96
SDC3-202ENST00000339394 ANKHQ9HCJ1 492 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 THSD1Q9NS62 852 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 NMRK1Q9NWW6 199 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 NAALAD2Q9Y3Q0 740 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 CCL27Q9Y4X3 112 aa21.05■□□□□ 0.96
SDC3-202ENST00000339394 TMEM184BQ9Y519 407 aaPredicted RBP21.05■□□□□ 0.96
SDC3-202ENST00000339394 CELSR3Q9NYQ7 3312 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 TEX51A0A1B0GUA7 166 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 MEN1O00255 615 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 RTCAO00442 366 aaKnown RBP21.04■□□□□ 0.96
SDC3-202ENST00000339394 POLR3GO15318 223 aaPredicted RBP21.04■□□□□ 0.96
SDC3-202ENST00000339394 BTN3A2P78410 334 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 IMPG1Q17R60 797 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 Q6ZSR9 355 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 RGMAQ96B86 450 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 C3orf30Q96M34 536 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 LRFN5Q96NI6 719 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 CCT7Q99832 543 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 PRDM7Q9NQW5 492 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 CACNA1AO00555 2505 aa21.04■□□□□ 0.96
SDC3-202ENST00000339394 AKAP13Q12802 2813 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 SGK494L7N484 410 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 SLC28A1O00337 649 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 HDAC3O15379 428 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 GALR3O60755 368 aaPredicted RBP21.03■□□□□ 0.96
SDC3-202ENST00000339394 SEMA3DO95025 777 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 DLGAP3O95886 979 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 ITGAXP20702 1163 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 OR1D4P47884 311 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 RAP1GDS1P52306 607 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 SHC2P98077 582 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 BTKQ06187 659 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 TGM3Q08188 693 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 ABHD18Q0P651 414 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 TBL3Q12788 808 aaKnown RBP21.03■□□□□ 0.96
SDC3-202ENST00000339394 ZNF385CQ66K41 422 aaPredicted RBP21.03■□□□□ 0.96
SDC3-202ENST00000339394 PRMT9Q6P2P2 845 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 TIPARPQ7Z3E1 657 aaKnown RBP21.03■□□□□ 0.96
SDC3-202ENST00000339394 DSELQ8IZU8 1212 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 GALNT6Q8NCL4 622 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 OR2T11Q8NH01 316 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 PROKR1Q8TCW9 393 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 C19orf60Q96EN9 201 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 MMABQ96EY8 250 aaPredicted RBP21.03■□□□□ 0.96
SDC3-202ENST00000339394 TBCDQ9BTW9 1192 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 SORBS1Q9BX66 1292 aaKnown RBP21.03■□□□□ 0.96
SDC3-202ENST00000339394 ZNF717Q9BY31 904 aaPredicted RBP21.03■□□□□ 0.96
SDC3-202ENST00000339394 NUF2Q9BZD4 464 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 AKIRIN1Q9H9L7 192 aaPredicted RBP21.03■□□□□ 0.96
SDC3-202ENST00000339394 LHX9Q9NQ69 397 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 MAU2Q9Y6X3 613 aa21.03■□□□□ 0.96
SDC3-202ENST00000339394 SLCO1B7G3V0H7 640 aa21.02■□□□□ 0.96
SDC3-202ENST00000339394 RGS14O43566 566 aa21.02■□□□□ 0.96
SDC3-202ENST00000339394 EDF1O60869 148 aaKnown RBP21.02■□□□□ 0.96
SDC3-202ENST00000339394 KLHL18O94889 574 aa21.02■□□□□ 0.96
SDC3-202ENST00000339394 NSA2O95478 260 aaKnown RBP21.02■□□□□ 0.96
SDC3-202ENST00000339394 AVPR1BP47901 424 aa21.02■□□□□ 0.96
SDC3-202ENST00000339394 ARFIP1P53367 373 aa21.02■□□□□ 0.96
SDC3-202ENST00000339394 XKR7Q5GH72 579 aa21.02■□□□□ 0.96
SDC3-202ENST00000339394 OR4C11Q6IEV9 310 aa21.02■□□□□ 0.96
SDC3-202ENST00000339394 WDR75Q8IWA0 830 aaKnown RBP21.02■□□□□ 0.96
SDC3-202ENST00000339394 ZDHHC19Q8WVZ1 309 aaPredicted RBP21.02■□□□□ 0.96
SDC3-202ENST00000339394 PPP1R36Q96LQ0 422 aa21.02■□□□□ 0.96
SDC3-202ENST00000339394 AHSPQ9NZD4 102 aa21.02■□□□□ 0.96
SDC3-202ENST00000339394 VTI1BQ9UEU0 232 aa21.02■□□□□ 0.96
SDC3-202ENST00000339394 ATP6AP2A0A1C7CYW4 349 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 H0YIG0 161 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 STMND1H3BQB6 276 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 ATP6AP2O75787 350 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 RSL1D1O76021 490 aaKnown RBP21.02■□□□□ 0.95
SDC3-202ENST00000339394 KLK3P07288 261 aaPredicted RBP21.02■□□□□ 0.95
SDC3-202ENST00000339394 ATXN8OSP0DMR3 200 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 CD82P27701 267 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 DCDP81605 110 aaKnown RBP21.02■□□□□ 0.95
SDC3-202ENST00000339394 AP5B1Q2VPB7 878 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 SPDYAQ5MJ70 313 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 C6orf15Q6UXA7 325 aaPredicted RBP21.02■□□□□ 0.95
SDC3-202ENST00000339394 ZNF793Q6ZN11 406 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 ZFAND4Q86XD8 727 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 METTL4Q8N3J2 472 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 AMER3Q8N944 861 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 CHTF18Q8WVB6 975 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 APIPQ96GX9 242 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 ZNF578Q96N58 590 aaPredicted RBP21.02■□□□□ 0.95
SDC3-202ENST00000339394 QRFPRQ96P65 431 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 ZNF304Q9HCX3 659 aa21.02■□□□□ 0.95
SDC3-202ENST00000339394 PFDN4Q9NQP4 134 aa21.02■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms