RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CCBE1Q6UXH8 406 aaPredicted RBP13.43□□□□□ -0.26
CSPG4-201ENST00000308508 ZNF334Q9HCZ1 680 aaPredicted RBP13.43□□□□□ -0.26
CSPG4-201ENST00000308508 ZDHHC18Q9NUE0 388 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 TAS2R8Q9NYW2 309 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 MYPNQ86TC9 1320 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 VILLO15195 856 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 NDUFS4O43181 175 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 CXCL14O95715 111 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 CAMLGP49069 296 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 GABARAPL2P60520 117 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 HMGCS1Q01581 520 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 TRAM2Q15035 370 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 DPYSL2Q16555 572 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 GSG1LQ6UXU4 331 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 DPEP2Q9H4A9 486 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 DTLQ9NZJ0 730 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 VWDEQ8N2E2 1590 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 SMIM30A4D0T7 59 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 F8W036 122 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 RGS9O75916 674 aaPredicted RBP13.43□□□□□ -0.26
CSPG4-201ENST00000308508 PABPC4LP0CB38 370 aaKnown RBP13.43□□□□□ -0.26
CSPG4-201ENST00000308508 GDF10P55107 478 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 BLOC1S1P78537 153 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 ARL11Q969Q4 196 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 TUBG2Q9NRH3 451 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 CEP170BQ9Y4F5 1589 aaPredicted RBP13.43□□□□□ -0.26
CSPG4-201ENST00000308508 SCGB2A1O75556 95 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 DPP6P42658 865 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 FRKP42685 505 aaPredicted RBP13.43□□□□□ -0.26
CSPG4-201ENST00000308508 ATP4BP51164 291 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 DGKQP52824 942 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 SLC26A5P58743 744 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 CDNFQ49AH0 187 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 PRAMEF14Q5SWL7 426 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 PRAMEF13Q5VWM6 474 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 PAQR3Q6TCH7 311 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 NRSN1Q8IZ57 195 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 ERVK-18Q9QC07 812 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 UFM1P61960 85 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 REEP3Q6NUK4 255 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 ZER1Q7Z7L7 766 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 FCRL5Q96RD9 977 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 CMKLR1Q99788 373 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 STUB1Q9UNE7 303 aa13.43□□□□□ -0.26
CSPG4-201ENST00000308508 CIB4A0PJX0 185 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 SLC35F4A4IF30 521 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 HRGP04196 525 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 IFNGR1P15260 489 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 CAPZA1P52907 286 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 ACBD6Q9BR61 282 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 STRA6Q9BX79 667 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 LRFN1Q9P244 771 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 A0A1W2PQ45 241 aaPredicted RBP13.42□□□□□ -0.26
CSPG4-201ENST00000308508 A0A1W2PQY0 241 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 CDC7O00311 574 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 BLKP51451 505 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 NCS1P62166 190 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 ACTA2P62736 377 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 ACTG2P63267 376 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 APOBEC3HQ6NTF7 200 aaKnown RBP13.42□□□□□ -0.26
CSPG4-201ENST00000308508 FCF1Q9Y324 198 aaKnown RBP13.42□□□□□ -0.26
CSPG4-201ENST00000308508 TRBV23OR9-2A0A075B6M9 112 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 FAM159BA6NKW6 160 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 BLOC1S5-TXNDC5H3BN57 136 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 ALDH3B1P43353 468 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 KCNC4Q03721 635 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 GRIK2Q13002 908 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 ESAMQ96AP7 390 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.42□□□□□ -0.26
CSPG4-201ENST00000308508 ERCC1P07992 297 aaPredicted RBP13.42□□□□□ -0.26
CSPG4-201ENST00000308508 EEF1DP3Q658K8 133 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 WDSUB1Q8N9V3 476 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 NLGN2Q8NFZ4 835 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 NPLQ9BXD5 320 aaPredicted RBP13.42□□□□□ -0.26
CSPG4-201ENST00000308508 ZNF536O15090 1300 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 LRRTM2O43300 516 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 FCER2P06734 321 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 FAPQ12884 760 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 DECR1Q16698 335 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 ZDHHC24Q6UX98 284 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 GTPBP8Q8N3Z3 284 aaPredicted RBP13.42□□□□□ -0.26
CSPG4-201ENST00000308508 OR7D4Q8NG98 312 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 JCADQ9P266 1359 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 HMX3A6NHT5 357 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 BOLA2-SMG1P6H3BVE0 249 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 BRCC3P46736 316 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 POU4F2Q12837 409 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 BATFQ16520 125 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 NPAS3Q8IXF0 933 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 DEDD2Q8WXF8 326 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 OR14A2Q96R54 314 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 ZDHHC3Q9NYG2 299 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 SALL4Q9UJQ4 1053 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 MDFIC2A0A1B0GVS7 189 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 DFNA5O60443 496 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 SHQ1Q6PI26 577 aaKnown RBP13.42□□□□□ -0.26
CSPG4-201ENST00000308508 MARVELD2Q8N4S9 558 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 CAMKVQ8NCB2 501 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 CNTNAP3BQ96NU0 1288 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 HNRNPABQ99729 332 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms