RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ABCB7O75027 752 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 SLC35G6P0C7Q6 338 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 CHMP24386 653 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 RPIAP49247 311 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 AKTIPQ9H8T0 292 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 PAQR5Q9NXK6 330 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-201ENST00000295550 MGAT4CQ9UBM8 478 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 SLC45A1Q9Y2W3 748 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 CIB4A0PJX0 185 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 PNLIPRP1P54315 467 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 NIPAL4Q0D2K0 466 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 FADDQ13158 208 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 GTF2IRD2BQ6EKJ0 949 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 GTF2IRD2Q86UP8 949 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 OTUB2Q96DC9 234 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 DHRS4Q9BTZ2 278 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 OR10A4Q9H209 315 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 MS4A12Q9NXJ0 267 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 INHBEP58166 350 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF45Q02386 682 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 DUSP4Q13115 394 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 DSG2Q14126 1118 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ODF4Q2M2E3 257 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 SFT2D3Q587I9 215 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 C7orf57Q8NEG2 295 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 FAM110BQ8TC76 370 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ASPNQ9BXN1 380 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 TLE6Q9H808 572 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 PHPT1Q9NRX4 125 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-201ENST00000295550 THUMPD1Q9NXG2 353 aaKnown RBP9.55□□□□□ -0.88
COL6A3-201ENST00000295550 SH2B3Q9UQQ2 575 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 SHANK3Q9BYB0 1731 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 STRCP1A6NGW2 1772 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 C2orf74A8MZ97 194 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 H7C417 338 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 H1F0P07305 194 aaKnown RBP9.55□□□□□ -0.88
COL6A3-201ENST00000295550 C8GP07360 202 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ZBTB48P10074 688 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-201ENST00000295550 C7P10643 843 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ALAS2P22557 587 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 CRISP3P54108 245 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 TARBP2Q15633 366 aaKnown RBP9.55□□□□□ -0.88
COL6A3-201ENST00000295550 XKR5Q6UX68 686 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 FANK1Q8TC84 345 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 HSH2DQ96JZ2 352 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 NPY6RQ99463 290 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 DUSP26Q9BV47 211 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF395Q9H8N7 513 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-201ENST00000295550 C14orf119Q9NWQ9 140 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 KLF15Q9UIH9 416 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 OR6C74A6NCV1 312 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ANXA8P13928 327 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 CHIT1Q13231 466 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ENPP2Q13822 863 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 TMEM80Q96HE8 168 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 FBXL20Q96IG2 436 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF641Q96N77 438 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-201ENST00000295550 DERL2Q9GZP9 239 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 IGFLR1Q9H665 355 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 HLA-DPB1P04440 258 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 FXYD6P3P58550 94 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 GALNT13Q8IUC8 556 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ZCCHC10Q8TBK6 192 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 PKP2Q99959 881 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 WRAP53Q9BUR4 548 aaKnown RBP9.55□□□□□ -0.88
COL6A3-201ENST00000295550 PBDC1Q9BVG4 233 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 MED12Q93074 2177 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 OR2AG2A6NM03 316 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 DENRO43583 198 aaKnown RBP9.55□□□□□ -0.88
COL6A3-201ENST00000295550 NUDT6P53370 316 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 PUS10Q3MIT2 529 aaKnown RBP9.55□□□□□ -0.88
COL6A3-201ENST00000295550 MINDY4Q4G0A6 757 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 SIRPB2Q5JXA9 342 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 FNDC8Q8TC99 324 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 PMEPA1Q969W9 287 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 PKP4Q99569 1192 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 UCK2Q9BZX2 261 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ACTR3BQ9P1U1 418 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 SMIM30A4D0T7 59 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ADH6P28332 368 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF616Q08AN1 781 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 PTGR1Q14914 329 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 DPY19L3Q6ZPD9 716 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 FAM124AQ86V42 546 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 AMIGO3Q86WK7 504 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 C3orf58Q8NDZ4 430 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 OR5T2Q8NGG2 359 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 POPDC3Q9HBV1 291 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 DNAJC27Q9NZQ0 273 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 PADI3Q9ULW8 664 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 PI4KAP42356 2102 aa9.55□□□□□ -0.88
COL6A3-201ENST00000295550 LRRC72A6NJI9 287 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 H3BSH0 61 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 OIP5O43482 229 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 FCER2P06734 321 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 GLP1RP43220 463 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 CHRFAM7AQ494W8 412 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF558Q96NG5 402 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 SLC29A3Q9BZD2 475 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TBC1D3DA0A087WVF3 549 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms