RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 PRO3102Q9H379 93 aa9.16□□□□□ -0.94
TRIM55-201ENST00000276573 ZNF696Q9H7X3 374 aa9.16□□□□□ -0.94
TRIM55-201ENST00000276573 MRPS30Q9NP92 439 aaKnown RBP9.16□□□□□ -0.94
TRIM55-201ENST00000276573 LHX9Q9NQ69 397 aa9.16□□□□□ -0.94
TRIM55-201ENST00000276573 TAS2R9Q9NYW1 312 aa9.16□□□□□ -0.94
TRIM55-201ENST00000276573 PCOLCE2Q9UKZ9 415 aa9.16□□□□□ -0.94
TRIM55-201ENST00000276573 SAMD4AQ9UPU9 718 aaKnown RBP9.16□□□□□ -0.94
TRIM55-201ENST00000276573 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.16□□□□□ -0.94
TRIM55-201ENST00000276573 NDUFS4O43181 175 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 SEMA4FO95754 770 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 NDUFS1P28331 727 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 PEBP1P30086 187 aaKnown RBP9.15□□□□□ -0.94
TRIM55-201ENST00000276573 MAPK12P53778 367 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 GAB1Q13480 694 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 SMAD4Q13485 552 aaKnown RBP9.15□□□□□ -0.94
TRIM55-201ENST00000276573 MYBPC3Q14896 1274 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 ZIC1Q15915 447 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 COL13A1Q5TAT6 717 aaPredicted RBP9.15□□□□□ -0.94
TRIM55-201ENST00000276573 RNF220Q5VTB9 566 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.15□□□□□ -0.94
TRIM55-201ENST00000276573 FAM20CQ8IXL6 584 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 DHRSXQ8N5I4 330 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 FAM47BQ8NA70 645 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 FLCNQ8NFG4 579 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 TTLQ8NG68 377 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 OR2L3Q8NG85 312 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 OR10Q1Q8NGQ4 319 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 HMGB4Q8WW32 186 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 ADI1Q9BV57 179 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 PHF7Q9BWX1 381 aaPredicted RBP9.15□□□□□ -0.94
TRIM55-201ENST00000276573 TMEM168Q9H0V1 697 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 SLC6A20Q9NP91 592 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 GPATCH2Q9NW75 528 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 SPHK1Q9NYA1 384 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 TAAR2Q9P1P5 351 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 USP36Q9P275 1121 aaKnown RBP9.15□□□□□ -0.94
TRIM55-201ENST00000276573 ZNF624Q9P2J8 865 aaPredicted RBP9.15□□□□□ -0.94
TRIM55-201ENST00000276573 RPS6KA6Q9UK32 745 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 ADAM29Q9UKF5 820 aa9.15□□□□□ -0.94
TRIM55-201ENST00000276573 PNMA8BQ9ULN7 279 aaPredicted RBP9.15□□□□□ -0.94
TRIM55-201ENST00000276573 NDRG2Q9UN36 371 aaKnown RBP9.15□□□□□ -0.94
TRIM55-201ENST00000276573 LRIT2A6NDA9 550 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 G3V2T6 193 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 GNGT2O14610 69 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 ZNF682O95780 498 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 NUDT7P0C024 238 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 SMIM18P0DKX4 95 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 DDCP20711 480 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 MYF6P23409 242 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 GRK3P35626 688 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 BCL6P41182 706 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 MVDP53602 400 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 SRP54P61011 504 aaKnown RBP9.15□□□□□ -0.95
TRIM55-201ENST00000276573 VAC14Q08AM6 782 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 DAG1Q14118 895 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 LRRC32Q14392 662 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 LRRC23Q53EV4 343 aaPredicted RBP9.15□□□□□ -0.95
TRIM55-201ENST00000276573 TMEM35AQ53FP2 167 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.15□□□□□ -0.95
TRIM55-201ENST00000276573 OTUD3Q5T2D3 398 aaPredicted RBP9.15□□□□□ -0.95
TRIM55-201ENST00000276573 OR4C11Q6IEV9 310 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 ISLR2Q6UXK2 745 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 CHRDL2Q6WN34 429 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 ZNF852Q6ZMS4 543 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 Q6ZSR6 202 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 CBLL1Q75N03 491 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 EIF3MQ7L2H7 374 aaKnown RBP9.15□□□□□ -0.95
TRIM55-201ENST00000276573 STK32CQ86UX6 486 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 ADHFE1Q8IWW8 467 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 ZCCHC7Q8N3Z6 543 aaKnown RBP9.15□□□□□ -0.95
TRIM55-201ENST00000276573 NATD1Q8N6N6 113 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 TRIML2Q8N7C3 387 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 TMEM145Q8NBT3 493 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 OR4E2Q8NGC2 313 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 OR52N2Q8NGI0 321 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 CCL4L1Q8NHW4 92 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 SLC35A5Q9BS91 424 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 SARGQ9BW04 601 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 TRIM4Q9C037 500 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 DDX31Q9H8H2 851 aaKnown RBP9.15□□□□□ -0.95
TRIM55-201ENST00000276573 POLMQ9NP87 494 aaPredicted RBP9.15□□□□□ -0.95
TRIM55-201ENST00000276573 CD320Q9NPF0 282 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 MIEF1Q9NQG6 463 aa9.15□□□□□ -0.95
TRIM55-201ENST00000276573 SMPD3Q9NY59 655 aaPredicted RBP9.15□□□□□ -0.95
TRIM55-201ENST00000276573 MAGED1Q9Y5V3 778 aaPredicted RBP9.15□□□□□ -0.95
TRIM55-201ENST00000276573 NUP214P35658 2090 aaPredicted RBP9.14□□□□□ -0.95
TRIM55-201ENST00000276573 TRBV23OR9-2A0A075B6M9 112 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 ISM1B1AKI9 464 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 TMPRSS11DO60235 418 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 TNFRSF21O75509 655 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 RASGRP1O95267 797 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 SNAP29O95721 258 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 IGLV3-19P01714 112 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 SERPIND1P05546 499 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 CMPK1P30085 196 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 SHMT2P34897 504 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 CAPGP40121 348 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 SLC19A1P41440 591 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 ACTR1BP42025 376 aa9.14□□□□□ -0.95
TRIM55-201ENST00000276573 MAGEA2P43356 314 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms