RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 FNDC4Q9H6D8 234 aaPredicted RBP2.98□□□□□ -1.93
CD44-239ENST00000639002 POLKQ9UBT6 870 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 TRBC2A0A5B9 178 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 NKX6-3A6NJ46 265 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 E9PAM4 449 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 PRB2P02812 416 aaPredicted RBP2.97□□□□□ -1.93
CD44-239ENST00000639002 MT-ND1P03886 318 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 GIG44P09565 113 aaPredicted RBP2.97□□□□□ -1.93
CD44-239ENST00000639002 ADORA3P0DMS8 318 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 HSD17B3P37058 310 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 RIDAP52758 137 aaKnown RBP2.97□□□□□ -1.93
CD44-239ENST00000639002 CYLC2Q14093 348 aaPredicted RBP2.97□□□□□ -1.93
CD44-239ENST00000639002 KNOP1Q1ED39 458 aaKnown RBP2.97□□□□□ -1.93
CD44-239ENST00000639002 DHRS11Q6UWP2 260 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 POGLUT1Q8NBL1 392 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 PYCR2Q96C36 320 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 SERAC1Q96JX3 654 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 GDAP1L1Q96MZ0 367 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 IL12RB2Q99665 862 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 YTHDF1Q9BYJ9 559 aaKnown RBP2.97□□□□□ -1.93
CD44-239ENST00000639002 RNF121Q9H920 327 aa2.97□□□□□ -1.93
CD44-239ENST00000639002 IGKV6D-21A0A0A0MT36 114 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 SIGLEC5O15389 551 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 OR6B1O95007 311 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 EEF1B2P24534 225 aaKnown RBP2.96□□□□□ -1.94
CD44-239ENST00000639002 GIFP27352 417 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 CHRNA3P32297 505 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 DRD3P35462 400 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 KRTAP10-1P60331 282 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 RBBP7Q16576 425 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 TMEM44Q2T9K0 475 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 UTF1Q5T230 341 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 ARMC4Q5T2S8 1044 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 LINC00242Q5T6M2 205 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 EMBQ6PCB8 327 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 TMUB2Q71RG4 321 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 XXYLT1Q8NBI6 393 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 MOB1AQ9H8S9 216 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 XAB2Q9HCS7 855 aaKnown RBP2.96□□□□□ -1.94
CD44-239ENST00000639002 PKD2L2Q9NZM6 624 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 MORF4L1Q9UBU8 362 aa2.96□□□□□ -1.94
CD44-239ENST00000639002 RNF123Q5XPI4 1314 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 A8MU76 341 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 KIF5CO60282 957 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 RECQL5O94762 991 aaPredicted RBP2.95□□□□□ -1.94
CD44-239ENST00000639002 LY6G6DO95868 133 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 FEN1P39748 380 aaKnown RBP2.95□□□□□ -1.94
CD44-239ENST00000639002 MTCP1P56278 107 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 CLDN17P56750 224 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 NHLRC3Q5JS37 347 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 C9orf152Q5JTZ5 239 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 ZNF506Q5JVG8 444 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 TEX35Q5T0J7 233 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 TTC27Q6P3X3 843 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 APCDD1Q8J025 514 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 P2RX5Q93086 422 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 RADILQ96JH8 1075 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 APOL2Q9BQE5 337 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 RBM24Q9BX46 236 aaKnown RBP2.95□□□□□ -1.94
CD44-239ENST00000639002 FZD8Q9H461 694 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 MARCH7Q9H992 704 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 ABCD2Q9UBJ2 740 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 POLLQ9UGP5 575 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 IKZF3Q9UKT9 509 aa2.95□□□□□ -1.94
CD44-239ENST00000639002 ZNF346Q9UL40 294 aaKnown RBP2.95□□□□□ -1.94
CD44-239ENST00000639002 TRBV5-4A0A0C4DH59 114 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 A0A1B0GTH9 108 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 LMO7DNF2Z398 122 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 PRAF2O60831 178 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 IGHG1P01857 330 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 HCKP08631 526 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 STAG3L1P0CL83 205 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 CD1DP15813 335 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 TCF4P15884 667 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 PPIAP62937 165 aaKnown RBP2.94□□□□□ -1.94
CD44-239ENST00000639002 BECN1Q14457 450 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 POM121L1PQ3SYA9 428 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 ERMARDQ5T6L9 678 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 KRT39Q6A163 491 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 Q6ZVQ6 151 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 MCM10Q7L590 875 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 PRUNE1Q86TP1 453 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 TEX26Q8N6G2 289 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 CCDC63Q8NA47 563 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 POMGNT2Q8NAT1 580 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 BADQ92934 168 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 B3GALT6Q96L58 329 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 TEX13BQ9BXU2 312 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 STRADBQ9C0K7 418 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 WDR41Q9HAD4 459 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 WDR35Q9P2L0 1181 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 SPATA2Q9UM82 520 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 AUP1Q9Y679 476 aa2.94□□□□□ -1.94
CD44-239ENST00000639002 HAT1O14929 419 aa2.93□□□□□ -1.94
CD44-239ENST00000639002 INPP4BO15327 924 aa2.93□□□□□ -1.94
CD44-239ENST00000639002 MLNRO43193 412 aa2.93□□□□□ -1.94
CD44-239ENST00000639002 MT-ND2P03891 347 aa2.93□□□□□ -1.94
CD44-239ENST00000639002 SLC1A4P43007 532 aa2.93□□□□□ -1.94
CD44-239ENST00000639002 RAB28P51157 221 aa2.93□□□□□ -1.94
CD44-239ENST00000639002 CCL14Q16627 93 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms