RNA–Protein interactions for RNA: ENST00000624887.1

PCDHB11-202, Transcript of protocadherin beta 11, humanhuman

TSL 2 BASIC

Gene PCDHB11, Length 1,973 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-202ENST00000624887 PPCDCQ96CD2 204 aa18.9■□□□□ 0.62
PCDHB11-202ENST00000624887 DTNBP1Q96EV8 351 aa18.9■□□□□ 0.62
PCDHB11-202ENST00000624887 MUS81Q96NY9 551 aa18.9■□□□□ 0.62
PCDHB11-202ENST00000624887 NRTNQ99748 197 aa18.9■□□□□ 0.62
PCDHB11-202ENST00000624887 AIF1LQ9BQI0 150 aa18.9■□□□□ 0.62
PCDHB11-202ENST00000624887 MKRN2Q9H000 416 aaKnown RBP18.9■□□□□ 0.62
PCDHB11-202ENST00000624887 ZNF576Q9H609 170 aa18.9■□□□□ 0.62
PCDHB11-202ENST00000624887 FBXL12Q9NXK8 326 aa18.9■□□□□ 0.62
PCDHB11-202ENST00000624887 CLEC1BQ9P126 229 aa18.9■□□□□ 0.62
PCDHB11-202ENST00000624887 GPR37L1O60883 481 aa18.89■□□□□ 0.61
PCDHB11-202ENST00000624887 CXCR2P25025 360 aa18.89■□□□□ 0.61
PCDHB11-202ENST00000624887 HBA1P69905 142 aa18.89■□□□□ 0.61
PCDHB11-202ENST00000624887 SGCGQ13326 291 aa18.89■□□□□ 0.61
PCDHB11-202ENST00000624887 PLCL1Q15111 1095 aa18.89■□□□□ 0.61
PCDHB11-202ENST00000624887 TTC23Q5W5X9 447 aa18.89■□□□□ 0.61
PCDHB11-202ENST00000624887 IKBIPQ70UQ0 350 aa18.89■□□□□ 0.61
PCDHB11-202ENST00000624887 AHSPQ9NZD4 102 aa18.89■□□□□ 0.61
PCDHB11-202ENST00000624887 WDR37Q9Y2I8 494 aa18.89■□□□□ 0.61
PCDHB11-202ENST00000624887 AP1M2Q9Y6Q5 423 aa18.89■□□□□ 0.61
PCDHB11-202ENST00000624887 PLRG1O43660 514 aaKnown RBP18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 NOBOXO60393 691 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 TBX6O95947 436 aaPredicted RBP18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 NTRK1P04629 796 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 NUDT7P0C024 238 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 ACP5P13686 325 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 PPP1R8Q12972 351 aaKnown RBP18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 MPEG1Q2M385 716 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 TMEM259Q4ZIN3 620 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 CCNYL2Q5T2Q4 361 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 KIAA1161Q6NSJ0 714 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 DUS1LQ6P1R4 473 aaKnown RBP18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 GALNT10Q86SR1 603 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 GANCQ8TET4 914 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 NMD3Q96D46 503 aaKnown RBP18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 MBOAT4Q96T53 435 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 GABRG3Q99928 467 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 TIMM29Q9BSF4 260 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 CUEDC1Q9NWM3 386 aaPredicted RBP18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 FAM118AQ9NWS6 357 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 IFT80Q9P2H3 777 aaPredicted RBP18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 SPASTQ9UBP0 616 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 CEPT1Q9Y6K0 416 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 TICRRQ7Z2Z1 1910 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 ATG2BQ96BY7 2078 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 A0A1W2PPV9 198 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 CCDC160A6NGH7 325 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 ANKDD1BA6NHY2 528 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 SEMA3DO95025 777 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 C6orf47O95873 294 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 NTSR1P30989 418 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 PCGF2P35227 344 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 CCR8P51685 355 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 SH3BGRP55822 239 aaPredicted RBP18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 DEPDC1Q5TB30 811 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 OR2T5Q6IEZ7 315 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 SHQ1Q6PI26 577 aaKnown RBP18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 LPCAT2Q7L5N7 544 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 OR2T29Q8NH02 315 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 OR14C36Q8NHC7 312 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 CIDECQ96AQ7 238 aaPredicted RBP18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 SLC17A9Q9BYT1 436 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 RMI1Q9H9A7 625 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 TM9SF3Q9HD45 589 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 THEGQ9P2T0 379 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 ABCG2Q9UNQ0 655 aa18.88■□□□□ 0.61
PCDHB11-202ENST00000624887 A0A1W2PQU0 124 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 TPP2P29144 1249 aaPredicted RBP18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 SERPINB1P30740 379 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 MVDP53602 400 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 REEP5Q00765 189 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 TMEM196Q5HYL7 178 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 KHDRBS2Q5VWX1 349 aaKnown RBP18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 VTCN1Q7Z7D3 282 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 NAGSQ8N159 534 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 RAB42Q8N4Z0 105 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 ANKRD53Q8N9V6 530 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 C12orf66Q96MD2 445 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 INSM2Q96T92 566 aaPredicted RBP18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 AMBRA1Q9C0C7 1298 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 PITHD1Q9GZP4 211 aaPredicted RBP18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 NT5DC2Q9H857 520 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 GPATCH2Q9NW75 528 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 VNN3Q9NY84 501 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 PTTG2Q9NZH5 202 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 C3orf18Q9UK00 162 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 FAF1Q9UNN5 650 aaPredicted RBP18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 SLC17A4Q9Y2C5 497 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 U3KQV3 271 aa18.87■□□□□ 0.61
PCDHB11-202ENST00000624887 PRR23AA6NEV1 266 aa18.86■□□□□ 0.61
PCDHB11-202ENST00000624887 H3BSA7 217 aa18.86■□□□□ 0.61
PCDHB11-202ENST00000624887 PLPP1O14494 284 aa18.86■□□□□ 0.61
PCDHB11-202ENST00000624887 FABP3P05413 133 aa18.86■□□□□ 0.61
PCDHB11-202ENST00000624887 CEACAM5P06731 702 aa18.86■□□□□ 0.61
PCDHB11-202ENST00000624887 IL3P08700 152 aa18.86■□□□□ 0.61
PCDHB11-202ENST00000624887 CDH2P19022 906 aaPredicted RBP18.86■□□□□ 0.61
PCDHB11-202ENST00000624887 PRKACGP22612 351 aa18.86■□□□□ 0.61
PCDHB11-202ENST00000624887 PSMB5P28074 263 aa18.86■□□□□ 0.61
PCDHB11-202ENST00000624887 SHMT2P34897 504 aa18.86■□□□□ 0.61
PCDHB11-202ENST00000624887 DLX2Q07687 328 aaPredicted RBP18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms