RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 TSGA13Q96PP4 275 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 ZDHHC2Q9UIJ5 367 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 PDE10AQ9Y233 779 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 DLGAP4Q9Y2H0 992 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 FAM240BA0A1B0GVZ2 78 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 MPC1LP0DKB6 136 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 CHRDL2Q6WN34 429 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 RNF130Q86XS8 419 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 OR10Q1Q8NGQ4 319 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 RHBDD1Q8TEB9 315 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 MOAP1Q96BY2 351 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 GPR22Q99680 433 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 G6PC3Q9BUM1 346 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 FAM120CQ9NX05 1096 aaKnown RBP11□□□□□ -0.65
CLIP1-219ENST00000620786 GLS2Q9UI32 602 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 MGAT4AQ9UM21 535 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 LRP6O75581 1613 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 ECHS1P30084 290 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 DNAJA1P31689 397 aaKnown RBP11□□□□□ -0.65
CLIP1-219ENST00000620786 ARFRP1Q13795 201 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 ACSBG2Q5FVE4 666 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 HSDL2Q6YN16 418 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 CSNK1A1LQ8N752 337 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 C7orf43Q8WVR3 580 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 CGREF1Q99674 301 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 OR1A2Q9Y585 309 aa11□□□□□ -0.65
CLIP1-219ENST00000620786 FAM172BPA6NC97 362 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 EDNRBP24530 442 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 PLP2Q04941 152 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 ZNF763Q0D2J5 394 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 P2RY8Q86VZ1 359 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 ZNF101Q8IZC7 436 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 KCNJ9Q92806 393 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 ASB6Q9NWX5 421 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 COMMD3-BMI1R4GMX3 469 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 GSTT2BP0CG30 244 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 CTBP2P56545 445 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 SLC5A9Q2M3M2 681 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 CLLU1OSQ5K130 101 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 TMEM225Q6GV28 225 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 ZNF611Q8N823 705 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 NAT14Q8WUY8 206 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 TNFAIP8L1Q8WVP5 186 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 HHIPQ96QV1 700 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 KCNA7Q96RP8 456 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 COPS4Q9BT78 406 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 RMI1Q9H9A7 625 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 TBC1D24Q9ULP9 559 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 WDR45Q9Y484 360 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 DNMT3AQ9Y6K1 912 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 LRRC37A3O60309 1634 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 SLC16A5O15375 505 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 TRMUO75648 421 aaKnown RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 HCKP08631 526 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 G6PDP11413 515 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 GABRA3P34903 492 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 RNF144AP50876 292 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 RPS15AP62244 130 aaKnown RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 PITPNAQ00169 270 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 CSTF1Q05048 431 aaKnown RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 MRPL49Q13405 166 aaKnown RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 FBXO43Q4G163 708 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 FAM69BQ5VUD6 431 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 ZDHHC14Q8IZN3 488 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 FITM2Q8N6M3 262 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 DNAJA4Q8WW22 397 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 TMEM234Q8WY98 164 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 NPLQ9BXD5 320 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 POU2F3Q9UKI9 436 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 E7EQ34 232 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 CHRM1P11229 460 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 MAGP20916 626 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 KCNC1P48547 511 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 SMSP52788 366 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 WDR5P61964 334 aaKnown RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 HHEXQ03014 270 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 ZDHHC24Q6UX98 284 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 RPS27LQ71UM5 84 aaKnown RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 CCDC116Q8IYX3 515 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 OR4C15Q8NGM1 316 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 SLC17A9Q9BYT1 436 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 POPDC3Q9HBV1 291 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 TIGARQ9NQ88 270 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 TNFRSF10DQ9UBN6 386 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 HCRTR2O43614 444 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 FARS2O95363 451 aaKnown RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 APBB3O95704 486 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 ITGA5P08648 1049 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 CEBPBP17676 345 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 PTNP21246 168 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 DRD1P21728 446 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 CD70P32970 193 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 HERC3Q15034 1050 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 ANKLE1Q8NAG6 615 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 DAZLQ92904 295 aaKnown RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 TMCO6Q96DC7 493 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 GFM1Q96RP9 751 aaKnown RBP10.99□□□□□ -0.65
CLIP1-219ENST00000620786 CD180Q99467 661 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 HERPUD2Q9BSE4 406 aa10.99□□□□□ -0.65
CLIP1-219ENST00000620786 TRIM39Q9HCM9 518 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms