RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 KLHL1Q9NR64 748 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 ZNF624Q9P2J8 865 aaPredicted RBP12.15□□□□□ -0.47
LIG1-221ENST00000613670 CLEC4AQ9UMR7 237 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 HCN4Q9Y3Q4 1203 aa12.15□□□□□ -0.47
LIG1-221ENST00000613670 TLX2O43763 284 aaPredicted RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 KLKB1P03952 638 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 CNR2P34972 360 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 POLR2LP62875 67 aaKnown RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 MED27Q6P2C8 311 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 AGTRAPQ6RW13 159 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 RFLNAQ6ZTI6 216 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 LAPTM4BQ86VI4 370 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 MMAAQ8IVH4 418 aaKnown RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 B3GNT7Q8NFL0 401 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 EXOSC8Q96B26 276 aaKnown RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 RNFT2Q96EX2 444 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 CRELD1Q96HD1 420 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 PPT2Q9UMR5 302 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 SATB2Q9UPW6 733 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 CLCA3PQ9Y6N3 262 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 A0A1W2PRB8 838 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 ZNF840PA6NDX5 716 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 J3KTA2 159 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 GFRA2O00451 464 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 HAT1O14929 419 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 ERAL1O75616 437 aaKnown RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 URODP06132 367 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 KLK1P06870 262 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 PPP2R1BP30154 601 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 SSTR4P31391 388 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 HNRNPFP52597 415 aaKnown RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 BTG3Q14201 252 aaPredicted RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 CEP78Q5JTW2 689 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 RGMBQ6NW40 437 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 AUTS2Q8WXX7 1259 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 EFHD2Q96C19 240 aaPredicted RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 REPS1Q96D71 796 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 ZNF300Q96RE9 604 aaPredicted RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 FNDC11Q9BVV2 318 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 SMURF1Q9HCE7 757 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 ABCB8Q9NUT2 735 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 NUFIP1Q9UHK0 495 aaKnown RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 NINQ8N4C6 2090 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 AREL1O15033 823 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 B4GALT3O60512 393 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 KCNK5O95279 499 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 LRG1P02750 347 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 TGM1P22735 817 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 HNRNPA0Q13151 305 aaKnown RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 KDM4DQ6B0I6 523 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 MZT2BQ6NZ67 158 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 CFAP206Q8IYR0 622 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 GPR26Q8NDV2 337 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 RAET1EQ8TD07 263 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 KLHL6Q8WZ60 621 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 OTUB1Q96FW1 271 aaPredicted RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 CEP295NLQ96MC4 621 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 OR5M11Q96RB7 305 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 NTMT1Q9BV86 223 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 TLR9Q9NR96 1032 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 TMEM45AQ9NWC5 275 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 UGT2A1Q9Y4X1 527 aa12.14□□□□□ -0.47
LIG1-221ENST00000613670 TRIP12Q14669 1992 aaPredicted RBP12.14□□□□□ -0.47
LIG1-221ENST00000613670 UTRNP46939 3433 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 OR2A25A4D2G3 310 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 CLDN24A6NM45 220 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 SNTNA6NMZ2 147 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 BCHEP06276 602 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 CCNYL3P0C7X3 344 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 SPNP16150 400 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 CCR7P32248 378 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 TALDO1P37837 337 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 TAS2R50P59544 299 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 ARPC4P59998 168 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 COL9A2Q14055 689 aaPredicted RBP12.13□□□□□ -0.47
LIG1-221ENST00000613670 SLBPQ14493 270 aaKnown RBP eCLIP12.13□□□□□ -0.47
LIG1-221ENST00000613670 PRSS36Q5K4E3 855 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 Q6ZVL8 140 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 DTX3Q8N9I9 347 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 C9orf43Q8TAL5 461 aaPredicted RBP12.13□□□□□ -0.47
LIG1-221ENST00000613670 PCDHGA3Q9Y5H0 932 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 METTL15A6NJ78 407 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 ANKRD28O15084 1053 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 PQBP1O60828 265 aaKnown RBP12.13□□□□□ -0.47
LIG1-221ENST00000613670 NME6O75414 186 aaPredicted RBP12.13□□□□□ -0.47
LIG1-221ENST00000613670 CDK1P06493 297 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 ACPPP15309 386 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 GGT2P36268 569 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 RFX3P48380 749 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 HNMTP50135 292 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 XKP51811 444 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 AGAP6Q5VW22 663 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 KRT74Q7RTS7 529 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 CMTM8Q8IZV2 173 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 CYP4Z2PQ8N1L4 340 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 MFSD4AQ8N468 514 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 AGAP4Q96P64 663 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 SLC22A4Q9H015 551 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 SUV39H2Q9H5I1 410 aa12.13□□□□□ -0.47
LIG1-221ENST00000613670 SLC52A3Q9NQ40 469 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms