RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PDE4DIPQ5VU43 2346 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 LAMA3Q16787 3333 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 LINC01553A4QN01 128 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 PTGES3LE9PB15 166 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 PLK4O00444 970 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 SUV39H1O43463 412 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 LZTS3O60299 673 aaPredicted RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 GCM2O75603 506 aaPredicted RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 ANGPTL1O95841 491 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 TGFB1P01137 390 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 NTRK1P04629 796 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 CYP4B1P13584 511 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 ZNF182P17025 639 aaPredicted RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 JUNDP17535 347 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 MAPK10P53779 464 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 CXCR4P61073 352 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 HBA1P69905 142 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 IL1RL1Q01638 556 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 PDE7AQ13946 482 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 ELAVL3Q14576 367 aaKnown RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 TEAD4Q15561 434 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 HIST2H2ACQ16777 129 aaPredicted RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 GAB4Q2WGN9 574 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 HIST2H2AA3Q6FI13 130 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 FAHD1Q6P587 224 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 NXPE4Q6UWF7 544 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 OR4K1Q8NGD4 311 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 OR2L2Q8NH16 312 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 B4GALNT2Q8NHY0 566 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 EZH1Q92800 747 aaPredicted RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 TANKQ92844 425 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 BADQ92934 168 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 FKBP10Q96AY3 582 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 CSF3RQ99062 836 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 DPEP2Q9H4A9 486 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 ATAD3AQ9NVI7 634 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 GPATCH2Q9NW75 528 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 ADPRHL2Q9NX46 363 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 THUMPD1Q9NXG2 353 aaKnown RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 PSME2Q9UL46 239 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 NDRG4Q9ULP0 352 aaKnown RBP9.68□□□□□ -0.86
VPS53-220ENST00000576149 PADI2Q9Y2J8 665 aa9.68□□□□□ -0.86
VPS53-220ENST00000576149 A0A0J9YVX5 310 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 OTOL1A6NHN0 477 aaPredicted RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 XPNPEP2O43895 674 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 FOXD2O60548 495 aaPredicted RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 KLHL18O94889 574 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 C9P02748 559 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 GBAP04062 536 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 FURINP09958 794 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 GALK1P51570 392 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 FPGSQ05932 587 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 NFE2L1Q14494 772 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 TMEM52BQ4KMG9 183 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 B3GNT8Q7Z7M8 397 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 ZC3H7AQ8IWR0 971 aaKnown RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 TTC29Q8NA56 475 aaPredicted RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 WDR48Q8TAF3 677 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 ZFYVE19Q96K21 471 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 DOHHQ9BU89 302 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 ZDHHC5Q9C0B5 715 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 SPNS1Q9H2V7 528 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 OR51B5Q9H339 312 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 DUSP21Q9H596 190 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 CCDC177Q9NQR7 707 aaPredicted RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 DEC1Q9P2X7 70 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 GMPPBQ9Y5P6 360 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 NUP214P35658 2090 aaPredicted RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 E9PQ18 207 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 C5orf67F2Z3F1 127 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 SAP18O00422 153 aaKnown RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 PI15O43692 258 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 VEGFDO43915 354 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 TNFRSF21O75509 655 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 NFATC1O95644 943 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 INHBBP09529 407 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 AQP1P29972 269 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 RPL3P39023 403 aaKnown RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 PIK3CBP42338 1070 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 SELENOWP63302 87 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 MC1RQ01726 317 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 MEF2AQ02078 507 aaPredicted RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 EMX1Q04741 257 aaPredicted RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 BNIP3Q12983 259 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 EIF4HQ15056 248 aaKnown RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 COX20Q5RI15 118 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 FAM71E1Q6IPT2 247 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 KLHL35Q6PF15 583 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 UNC5DQ6UXZ4 953 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 ZNF852Q6ZMS4 543 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 ERN2Q76MJ5 926 aaKnown RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 TSPYL5Q86VY4 417 aaPredicted RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 METTL4Q8N3J2 472 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 ATG16L2Q8NAA4 619 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 C16orf78Q8WTQ4 265 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 SETD7Q8WTS6 366 aaKnown RBP9.67□□□□□ -0.86
VPS53-220ENST00000576149 ARMC5Q96C12 935 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 PPP1R16AQ96I34 528 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 EPYCQ99645 322 aa9.67□□□□□ -0.86
VPS53-220ENST00000576149 APOL4Q9BPW4 351 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms