RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 C8orf89P0DMQ9 161 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 CD1DP15813 335 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 ALOX12P18054 663 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 IL10P22301 178 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 GSTM2P28161 218 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 HPDP32754 393 aaPredicted RBP7.67□□□□□ -1.18
VPS53-214ENST00000572607 AHRP35869 848 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 XCR1P46094 333 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 SCTRP47872 440 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 SLC6A12P48065 614 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 SERPINB8P50452 374 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 SOX8P57073 446 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 MAT1AQ00266 395 aaKnown RBP7.67□□□□□ -1.18
VPS53-214ENST00000572607 REEP5Q00765 189 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 CDC16Q13042 620 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 NADK2Q4G0N4 442 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 AGAP7PQ5VUJ5 663 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 FAAH2Q6GMR7 532 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 SULT1C3Q6IMI6 304 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 KLC3Q6P597 504 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 NXPE4Q6UWF7 544 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 KIRREL2Q6UWL6 708 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 NDUFAF7Q7L592 441 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 ZC3H7AQ8IWR0 971 aaKnown RBP7.67□□□□□ -1.18
VPS53-214ENST00000572607 KBTBD2Q8IY47 623 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 KRT78Q8N1N4 520 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 AMER3Q8N944 861 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 KCT2Q8NC54 265 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 TTLQ8NG68 377 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 OR11G2Q8NGC1 345 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 OR4K1Q8NGD4 311 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 OR51Q1Q8NH59 317 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 NT5CQ8TCD5 201 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 CCT6BQ92526 530 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 KIAA1191Q96A73 305 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 RHBDF1Q96CC6 855 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 TM4SF19Q96DZ7 209 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 THOC3Q96J01 351 aaKnown RBP7.67□□□□□ -1.18
VPS53-214ENST00000572607 AGAP4Q96P64 663 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 OR4K3Q96R72 315 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 SMAD5Q99717 465 aaKnown RBP7.67□□□□□ -1.18
VPS53-214ENST00000572607 MACROD1Q9BQ69 325 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 SARGQ9BW04 601 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 TGIF2Q9GZN2 237 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 LHPPQ9H008 270 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 ILKAPQ9H0C8 392 aaPredicted RBP7.67□□□□□ -1.18
VPS53-214ENST00000572607 SYNPO2LQ9H987 977 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 ZNF160Q9HCG1 818 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 ZDHHC18Q9NUE0 388 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 DNAJC11Q9NVH1 559 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 RIC8BQ9NVN3 520 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 NUDT4Q9NZJ9 180 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 HCN3Q9P1Z3 774 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 ZFP69BQ9UJL9 534 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 ACOT9Q9Y305 439 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 MRPS2Q9Y399 296 aaKnown RBP7.67□□□□□ -1.18
VPS53-214ENST00000572607 NAALAD2Q9Y3Q0 740 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 ITPR2Q14571 2701 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 MYO9AB2RTY4 2548 aa7.67□□□□□ -1.18
VPS53-214ENST00000572607 TEP1Q99973 2627 aaKnown RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 SPTBN1Q01082 2364 aaKnown RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 A0A088AWK7 358 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 CCDC189A1A4V9 331 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 SYCE1LA8MT33 242 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 SUPT3HB4E1H0 165 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 PSMD12O00232 456 aaPredicted RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 LCMT2O60294 686 aaKnown RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 ALOX12BO75342 701 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 VPS4BO75351 444 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 RDH16O75452 317 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 SUPT3HO75486 399 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 FAM155BO75949 473 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 WISP3O95389 354 aaPredicted RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 LTA4HP09960 611 aaKnown RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 C1GALT1C1LP0DN25 315 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 ICAM2P13598 275 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 TFEBP19484 476 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 ZNF10P21506 573 aaPredicted RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 JAK1P23458 1154 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 TYK2P29597 1187 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 GDF5P43026 501 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 HSPA7P48741 367 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 STXBP1P61764 594 aaKnown RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 EEF1A2Q05639 463 aaKnown RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 SLBPQ14493 270 aaKnown RBP eCLIP7.66□□□□□ -1.18
VPS53-214ENST00000572607 EFTUD2Q15029 972 aaKnown RBP eCLIP7.66□□□□□ -1.18
VPS53-214ENST00000572607 PDK4Q16654 411 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 HIST2H2ACQ16777 129 aaPredicted RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 SYT16Q17RD7 645 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 FAM83EQ2M2I3 478 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 ZXDCQ2QGD7 858 aaPredicted RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 DEFB134Q4QY38 66 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 PAGE2BQ5JRK9 111 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 MROH9Q5TGP6 573 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 ATG9BQ674R7 924 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 HIST2H2AA3Q6FI13 130 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 RIPOR1Q6ZS17 1223 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 LRRC70Q7Z2Q7 622 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 CMC1Q7Z7K0 106 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 RELL1Q8IUW5 271 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms