RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CD96P40200 585 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 AVPR1BP47901 424 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 MEF2AQ02078 507 aaPredicted RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 DHX9Q08211 1270 aaKnown RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 HYAL2Q12891 473 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 NAE1Q13564 534 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 THOC5Q13769 683 aaKnown RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 PTK6Q13882 451 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 USP10Q14694 798 aaKnown RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 C3AR1Q16581 482 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 NDUFA9Q16795 377 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 LONRF1Q17RB8 773 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ZNF630Q2M218 657 aaPredicted RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 BTBD16Q32M84 506 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 TTLL9Q3SXZ7 439 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 RNFT1Q5M7Z0 435 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ACER2Q5QJU3 275 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 RNASEH2BQ5TBB1 312 aaKnown RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 THEMIS2Q5TEJ8 643 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ABHD17BQ5VST6 288 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 SPINK14Q6IE38 97 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 WDR93Q6P2C0 686 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 AGTRAPQ6RW13 159 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 LCTLQ6UWM7 567 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 TMEM207Q6UWW9 146 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 BNC2Q6ZN30 1099 aaPredicted RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 Q6ZPB1 254 aaPredicted RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 NCCRP1Q6ZVX7 275 aaPredicted RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 FGD2Q7Z6J4 655 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 MRGPRGQ86SM5 289 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ASPGQ86U10 573 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 CNTN4Q8IWV2 1026 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 CTAGE4Q8IX94 777 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 LMNTD2Q8IXW0 634 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ZNF295-AS1Q8N0V1 137 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ZNF808Q8N4W9 903 aaPredicted RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 MFSD9Q8NBP5 474 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ACBD4Q8NC06 268 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ZNF740Q8NDX6 193 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ABHD11Q8NFV4 315 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 TRIM58Q8NG06 486 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 OR56A3Q8NH54 315 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ZCCHC10Q8TBK6 192 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ELP5Q8TE02 316 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 MAGOHBQ96A72 148 aaKnown RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 THAP11Q96EK4 314 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 PEX11GQ96HA9 241 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 FRMD6Q96NE9 622 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 EBNA1BP2Q99848 306 aaKnown RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 RBCK1Q9BYM8 510 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 TRIM8Q9BZR9 551 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 ATG10Q9H0Y0 220 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 XAB2Q9HCS7 855 aaKnown RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 MMP25Q9NPA2 562 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 CCDC177Q9NQR7 707 aaPredicted RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 IARS2Q9NSE4 1012 aaKnown RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 C20orf96Q9NUD7 363 aaPredicted RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 ANKRD10Q9NXR5 420 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 UTP6Q9NYH9 597 aaKnown RBP6.32□□□□□ -1.4
VPS53-213ENST00000572334 SEC14L3Q9UDX4 400 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 TINAGQ9UJW2 476 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 NAALAD2Q9Y3Q0 740 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 SLC22A7Q9Y694 548 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 COMMD10Q9Y6G5 202 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 VPS13CQ709C8 3753 aa6.32□□□□□ -1.4
VPS53-213ENST00000572334 IGKV3D-11A0A0A0MRZ8 115 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 ZNF860A6NHJ4 632 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 MAGEB17A8MXT2 336 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 CCL21O00585 134 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 ADAM10O14672 748 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 TP73O15350 636 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 SLC16A5O15375 505 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 GALR3O60755 368 aaPredicted RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 SLC19A2O60779 497 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 CDC123O75794 336 aaPredicted RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 CRYABP02511 175 aaKnown RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 SMIM10L1P0DMW3 83 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 HTR1EP28566 365 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 HNRNPH1P31943 449 aaKnown RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 KIR3DL1P43629 444 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 AGTR2P50052 363 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 SLC26A5P58743 744 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 GNG11P61952 73 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 OLR1P78380 273 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 BTG2P78543 158 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 NAA30Q147X3 362 aaPredicted RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 ABRAXAS2Q15018 415 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 OR1C1Q15619 314 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 MEP1AQ16819 746 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 MINDY4Q4G0A6 757 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 SFT2D3Q587I9 215 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 CATSPEREQ5SY80 951 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 CAPN13Q6MZZ7 669 aaPredicted RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 UGT3A1Q6NUS8 523 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 PAPD4Q6PIY7 484 aaKnown RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 CCDC137Q6PK04 289 aaKnown RBP6.31□□□□□ -1.4
VPS53-213ENST00000572334 SBSNQ6UWP8 590 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 C17orf64Q86WR6 236 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 KIF2BQ8N4N8 673 aa6.31□□□□□ -1.4
VPS53-213ENST00000572334 ARFGAP2Q8N6H7 521 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms