RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 COX7A2P14406 83 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 DRD2P14416 443 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 HOXD12P35452 270 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 FASLGP48023 281 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 ARRB1P49407 418 aaPredicted RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 NME5P56597 212 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 NXPH1P58417 271 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 SKP1P63208 163 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 UBE2IP63279 158 aaKnown RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 TXNL4AP83876 142 aaKnown RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 RGS1Q08116 209 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 DUOXA1Q1HG43 343 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 FAM174BQ3ZCQ3 159 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 TIGD2Q4W5G0 525 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 C6orf10Q5SRN2 563 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 LRIF1Q5T3J3 769 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 ERICH5Q6P6B1 374 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 ADCK2Q7Z695 626 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 DHFR2Q86XF0 187 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 HPS6Q86YV9 775 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 SLC22A18ASQ8N1D0 253 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 C1orf52Q8N6N3 182 aaKnown RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 LINC01555Q8NAE3 123 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 MFSD9Q8NBP5 474 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 CAMKVQ8NCB2 501 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 CATSPER1Q8NEC5 780 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 FAM46DQ8NEK8 389 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 OR4E2Q8NGC2 313 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 OR6C4Q8NGE1 309 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 OR52E4Q8NGH9 312 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 SLC26A7Q8TE54 656 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 ZDHHC1Q8WTX9 485 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 GTF2H4Q92759 462 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 EDAQ92838 391 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 DUS3LQ96G46 650 aaKnown RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 SLC6A18Q96N87 628 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 PRAP1Q96NZ9 151 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 KCNC2Q96PR1 638 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 HBEGFQ99075 208 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 CGREF1Q99674 301 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 ECSITQ9BQ95 431 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 ORAI3Q9BRQ5 295 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 TBCDQ9BTW9 1192 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 TPSD1Q9BZJ3 242 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 ACTL8Q9H568 366 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 DDX31Q9H8H2 851 aaKnown RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 EBF2Q9HAK2 575 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 S100A14Q9HCY8 104 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 TM9SF3Q9HD45 589 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 EHD3Q9NZN3 535 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 C6orf203Q9P0P8 240 aaPredicted RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 ACTR3BQ9P1U1 418 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 ZNF624Q9P2J8 865 aaPredicted RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 ZNF282Q9UDV7 671 aaPredicted RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 GIMAP2Q9UG22 337 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 KLF15Q9UIH9 416 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 MAGEL2Q9UJ55 1249 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 PSME2Q9UL46 239 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 PCDHA9Q9Y5H5 950 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 F5P12259 2224 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 MYO9BQ13459 2157 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 A0A1B0GTW7 788 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 LMO7DNF2Z398 122 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 K7ESF4 209 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ACOT8O14734 319 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 SCAMP2O15127 329 aaKnown RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 LAMTOR5O43504 91 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ENTPD5O75356 428 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 TGFB1P01137 390 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 GPIP06744 558 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ANXA6P08133 673 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 SLC35G6P0C7Q6 338 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 FCGR1AP12314 374 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 IL10P22301 178 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 SLC6A2P23975 617 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 AK4P27144 223 aaPredicted RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 IL12AP29459 219 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ZFP36L2P47974 494 aaKnown RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 SLC7A2P52569 658 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 MAPK12P53778 367 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 EPHA4P54764 986 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 RHDQ02161 417 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 HHEXQ03014 270 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 CEACAM7Q14002 265 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 PTGR1Q14914 329 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 SLC9A5Q14940 896 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ZIC1Q15915 447 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ADPRMQ3LIE5 342 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 PRRT3Q5FWE3 981 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ZC3H12BQ5HYM0 836 aaKnown RBP7.62□□□□□ -1.19
VPS39-213ENST00000570062 SPANXN4Q5MJ08 99 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 CCNYL2Q5T2Q4 361 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 OR4C11Q6IEV9 310 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 ZNF425Q6IV72 752 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 NANOGP8Q6NSW7 305 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 TRIM40Q6P9F5 258 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 OGFOD3Q6PK18 319 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 TMEM26Q6ZUK4 368 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 COMMD6Q7Z4G1 85 aa7.62□□□□□ -1.19
VPS39-213ENST00000570062 PTRH1Q86Y79 214 aaKnown RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms