RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 LANCL2Q9NS86 450 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 DNAJC11Q9NVH1 559 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 CD274Q9NZQ7 290 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 C19orf25Q9UFG5 118 aaPredicted RBP19.15■□□□□ 0.66
CLK3-225ENST00000569063 RNF112Q9ULX5 631 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 CSAG2Q9Y5P2 127 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 RELNP78509 3460 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 DOCK10Q96BY6 2186 aa19.15■□□□□ 0.66
CLK3-225ENST00000569063 ZNF860A6NHJ4 632 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 STK16O75716 305 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 CTAGE8P0CG41 777 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 GSTM2P28161 218 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 PHBP35232 272 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 GMPRP36959 345 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 HSPA7P48741 367 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 AGTR2P50052 363 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 RHAGQ02094 409 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 DLG1Q12959 904 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 TMIGD1Q6UXZ0 262 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 CCDC91Q7Z6B0 441 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 TBC1D1Q86TI0 1168 aaPredicted RBP19.14■□□□□ 0.65
CLK3-225ENST00000569063 CTAGE4Q8IX94 777 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 KRT78Q8N1N4 520 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 PLPP5Q8NEB5 264 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 BRIX1Q8TDN6 353 aaKnown RBP19.14■□□□□ 0.65
CLK3-225ENST00000569063 FUT8Q9BYC5 575 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 IGSF5Q9NSI5 407 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 NINJ2Q9NZG7 142 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 ACOT9Q9Y305 439 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 PCDHGA10Q9Y5H3 936 aa19.14■□□□□ 0.65
CLK3-225ENST00000569063 SCN3AQ9NY46 2000 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 HMX2A2RU54 273 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 OR2W5A6NFC9 320 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 CLGNO14967 610 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 CHST10O43529 356 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 DNAJB6O75190 326 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 B3GALT4O96024 378 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 S100BP04271 92 aaPredicted RBP19.13■□□□□ 0.65
CLK3-225ENST00000569063 LTA4HP09960 611 aaKnown RBP19.13■□□□□ 0.65
CLK3-225ENST00000569063 TFEBP19484 476 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 SOX11P35716 441 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 UBAP2LQ14157 1087 aaKnown RBP19.13■□□□□ 0.65
CLK3-225ENST00000569063 SLBPQ14493 270 aaKnown RBP eCLIP19.13■□□□□ 0.65
CLK3-225ENST00000569063 LINC00696Q6ZRV3 163 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 LANCL3Q6ZV70 420 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 ANKRD37Q7Z713 158 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.13■□□□□ 0.65
CLK3-225ENST00000569063 CISD2Q8N5K1 135 aaKnown RBP19.13■□□□□ 0.65
CLK3-225ENST00000569063 DNAJB14Q8TBM8 379 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 ESAMQ96AP7 390 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 TBC1D20Q96BZ9 403 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 C19orf60Q96EN9 201 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 WDR34Q96EX3 536 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 KLHL31Q9H511 634 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 ACSS3Q9H6R3 686 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 ALG9Q9H6U8 611 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 PTGFRNQ9P2B2 879 aa19.13■□□□□ 0.65
CLK3-225ENST00000569063 A0A087X1B8 175 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 MAGEB17A8MXT2 336 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 PRAMEF4O60810 478 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 KERAO60938 352 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 WFS1O76024 890 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 FHP07954 510 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 CELA2AP08217 269 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 GNLYP22749 145 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 HNF4AP41235 474 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 UQCRFS1P47985 274 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 RAB8AP61006 207 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 STXBP1P61764 594 aaKnown RBP19.12■□□□□ 0.65
CLK3-225ENST00000569063 OLR1P78380 273 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 SRSF1Q07955 248 aaKnown RBP eCLIP19.12■□□□□ 0.65
CLK3-225ENST00000569063 TLR1Q15399 786 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 PDK4Q16654 411 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 FBXO48Q5FWF7 155 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 TOR1AIP1Q5JTV8 583 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 MROH9Q5TGP6 573 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 PRAMEF9Q5VWM5 478 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 PLAG1Q6DJT9 500 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 PTCD3Q96EY7 689 aaKnown RBP19.12■□□□□ 0.65
CLK3-225ENST00000569063 ATOH8Q96SQ7 321 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 BARD1Q99728 777 aaKnown RBP19.12■□□□□ 0.65
CLK3-225ENST00000569063 CD244Q9BZW8 370 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 AICDAQ9GZX7 198 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 NUDT4Q9NZJ9 180 aa19.12■□□□□ 0.65
CLK3-225ENST00000569063 ASH1LQ9NR48 2969 aaKnown RBP19.11■□□□□ 0.65
CLK3-225ENST00000569063 IGHV3-20A0A0C4DH32 117 aa19.11■□□□□ 0.65
CLK3-225ENST00000569063 CCDC189A1A4V9 331 aa19.11■□□□□ 0.65
CLK3-225ENST00000569063 LRIT2A6NDA9 550 aa19.11■□□□□ 0.65
CLK3-225ENST00000569063 TCP11X1B4DZS4 312 aa19.11■□□□□ 0.65
CLK3-225ENST00000569063 CDC123O75794 336 aaPredicted RBP19.11■□□□□ 0.65
CLK3-225ENST00000569063 SEC24DO94855 1032 aaPredicted RBP19.11■□□□□ 0.65
CLK3-225ENST00000569063 C2P06681 752 aa19.11■□□□□ 0.65
CLK3-225ENST00000569063 ITGAMP11215 1152 aa19.11■□□□□ 0.65
CLK3-225ENST00000569063 JAK1P23458 1154 aa19.11■□□□□ 0.65
CLK3-225ENST00000569063 ECHS1P30084 290 aa19.11■□□□□ 0.65
CLK3-225ENST00000569063 GLRBP48167 497 aa19.11■□□□□ 0.65
CLK3-225ENST00000569063 BMPR2Q13873 1038 aa19.11■□□□□ 0.65
CLK3-225ENST00000569063 ZNF169Q14929 603 aaPredicted RBP19.11■□□□□ 0.65
CLK3-225ENST00000569063 ABRAXAS2Q15018 415 aa19.11■□□□□ 0.65
CLK3-225ENST00000569063 NSDHLQ15738 373 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms