RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 TRGV8A0A0C4DH27 118 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 TRBC2A0A5B9 178 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 SYNDIG1LA6NDD5 238 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 TXNL1O43396 289 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 SAP30O75446 220 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 BAG3O95817 575 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 SERPING1P05155 500 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 OR52Z1P0C646 297 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 STAG3L1P0CL83 205 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 NR2F1P10589 423 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 CPT2P23786 658 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 EDNRAP25101 427 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 FCGR2BP31994 310 aaPredicted RBP2.18□□□□□ -2.06
VPS35-207ENST00000568191 FCGR2CP31995 323 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 CAPZA2P47755 286 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 CLDN15P56746 228 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 UBASH3AP57075 661 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 MLF2Q15773 248 aaPredicted RBP2.18□□□□□ -2.06
VPS35-207ENST00000568191 PTGISQ16647 500 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 Q1RN00 199 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 ERMARDQ5T6L9 678 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 OR4C11Q6IEV9 310 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 TTC27Q6P3X3 843 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 ENPP7Q6UWV6 458 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 CCBE1Q6UXH8 406 aaPredicted RBP2.18□□□□□ -2.06
VPS35-207ENST00000568191 NXPE2Q96DL1 559 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 LINC00167Q96N53 147 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 ANKRD27Q96NW4 1050 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 MUS81Q96NY9 551 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 PI4K2AQ9BTU6 479 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 PAPOLGQ9BWT3 736 aaKnown RBP2.18□□□□□ -2.06
VPS35-207ENST00000568191 NACAP1Q9BZK3 213 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 RPF1Q9H9Y2 349 aaKnown RBP2.18□□□□□ -2.06
VPS35-207ENST00000568191 C3orf14Q9HBI5 128 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 DNAJC4Q9NNZ3 241 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 CUTCQ9NTM9 273 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 PILRBQ9UKJ0 227 aa2.18□□□□□ -2.06
VPS35-207ENST00000568191 FAM205AQ6ZU69 1335 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 C17orf105B2RV13 164 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 H0Y9J4 135 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 P4HA2O15460 535 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 MAGEB2O15479 319 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 LDHCP07864 332 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 SUPT20HL2P0C7V6 817 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 F3P13726 295 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 IL11P20809 199 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 SLC1A4P43007 532 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 CRYBA2P53672 197 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 CLDN17P56750 224 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 CALD1Q05682 793 aaKnown RBP2.17□□□□□ -2.06
VPS35-207ENST00000568191 ACSM1Q08AH1 577 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 PRPF4BQ13523 1007 aaKnown RBP2.17□□□□□ -2.06
VPS35-207ENST00000568191 LBHQ53QV2 105 aaPredicted RBP2.17□□□□□ -2.06
VPS35-207ENST00000568191 CFAP58Q5T655 872 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 EMBQ6PCB8 327 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 CPEB2Q7Z5Q1 589 aaKnown RBP2.17□□□□□ -2.06
VPS35-207ENST00000568191 HIPK1Q86Z02 1210 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 BEST4Q8NFU0 473 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 KIAA1524Q8TCG1 905 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 PYCR2Q96C36 320 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 LURAP1Q96LR2 239 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 LRRC3BQ96PB8 259 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 NEDD4LQ96PU5 975 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 TAAR6Q96RI8 345 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 SLF1Q9BQI6 1058 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 NUDT16L1Q9BRJ7 211 aaKnown RBP2.17□□□□□ -2.06
VPS35-207ENST00000568191 GTPBP2Q9BX10 602 aaKnown RBP2.17□□□□□ -2.06
VPS35-207ENST00000568191 TRIM7Q9C029 511 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 SLC39A8Q9C0K1 460 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 FN3KQ9H479 309 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 ASB8Q9H765 288 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 RAB9BQ9NP90 201 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 CLEC5AQ9NY25 188 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 ANAPC11Q9NYG5 84 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 MGAT4AQ9UM21 535 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 PASKQ96RG2 1323 aa2.17□□□□□ -2.06
VPS35-207ENST00000568191 HEG1Q9ULI3 1381 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 A0A1W2PPW3 197 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 BCLAF3A2AJT9 711 aaKnown RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 MTMR11A4FU01 709 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 K7ENM7 598 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 RTCAO00442 366 aaKnown RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 RECQL5O94762 991 aaPredicted RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 PENKP01210 267 aaPredicted RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 C9P02748 559 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 DNTTP04053 509 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 CD1DP15813 335 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 SELEP16581 610 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 GOT1P17174 413 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 ZBTB25P24278 435 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 CTNNA2P26232 953 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 SPRP35270 261 aaPredicted RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 MATKP42679 507 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 RAD52P43351 418 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 KRTAP10-8P60410 259 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 ABCE1P61221 599 aaKnown RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 TRA2BP62995 288 aaKnown RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 SIX1Q15475 284 aaPredicted RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 TMEM44Q2T9K0 475 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 TTC31Q49AM3 519 aaPredicted RBP2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms