RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CFHR1Q03591 330 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 RGS1Q08116 209 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 SF3A2Q15428 464 aaKnown RBP29.16■■■□□ 2.26
CTCF-203ENST00000566078 RINLQ6ZS11 566 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 USP53Q70EK8 1073 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 KRTCAP2Q8N6L1 136 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 RCN3Q96D15 328 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 MS4A6EQ96DS6 147 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 PRRX2Q99811 253 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 ZNF717Q9BY31 904 aaPredicted RBP29.16■■■□□ 2.26
CTCF-203ENST00000566078 SLC6A16Q9GZN6 736 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 FAM60AQ9NP50 221 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 MCM8Q9UJA3 840 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 PCDHGB2Q9Y5G2 931 aa29.16■■■□□ 2.26
CTCF-203ENST00000566078 MN1Q10571 1320 aaPredicted RBP29.15■■■□□ 2.26
CTCF-203ENST00000566078 LOC105369274A0A096LPK9 316 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 LOC102723532A0A0G2JNH3 316 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 B2RBV5 119 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 H0YGG7 62 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 P2RX6O15547 441 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 RASSF9O75901 435 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 BSGP35613 385 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 CLDN8P56748 225 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 ARF3P61204 181 aaPredicted RBP29.15■■■□□ 2.26
CTCF-203ENST00000566078 STXBP1P61764 594 aaKnown RBP29.15■■■□□ 2.26
CTCF-203ENST00000566078 RCAN2Q14206 197 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 PRR23CQ6ZRP0 262 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 UBE3DQ7Z6J8 389 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 OR4N4Q8N0Y3 316 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 FBXO27Q8NI29 283 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 TM4SF19Q96DZ7 209 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 TCTN2Q96GX1 697 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 EGLN2Q96KS0 407 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 C17orf62Q9BQA9 187 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 CCDC3Q9BQI4 270 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 RTKNQ9BST9 563 aa29.15■■■□□ 2.26
CTCF-203ENST00000566078 IGHV5-51A0A0C4DH38 117 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 CASC3O15234 703 aaKnown RBP29.14■■■□□ 2.26
CTCF-203ENST00000566078 LRATO95237 230 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 ZNF806P0C7X5 589 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 CKMT1AP12532 417 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 PCSK2P16519 638 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 CAPN3P20807 821 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 PLA2G16P53816 162 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 ZNF763Q0D2J5 394 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 PWP1Q13610 501 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 DEFB110Q30KQ9 67 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 INAVAQ3KP66 663 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 PAGE2Q7Z2X7 111 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 NUDT13Q86X67 352 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 NUDT8Q8WV74 236 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 LHX9Q9NQ69 397 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 SDAD1Q9NVU7 687 aaKnown RBP eCLIP29.14■■■□□ 2.26
CTCF-203ENST00000566078 SOHLH2Q9NX45 425 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 TMEM9Q9P0T7 183 aa29.14■■■□□ 2.26
CTCF-203ENST00000566078 C4orf51C9J302 202 aa29.13■■■□□ 2.25
CTCF-203ENST00000566078 ERI3O43414 337 aaKnown RBP29.13■■■□□ 2.25
CTCF-203ENST00000566078 EEDO75530 441 aaKnown RBP29.13■■■□□ 2.25
CTCF-203ENST00000566078 C9P02748 559 aa29.13■■■□□ 2.25
CTCF-203ENST00000566078 PTPN4P29074 926 aa29.13■■■□□ 2.25
CTCF-203ENST00000566078 MLLT3P42568 568 aaPredicted RBP29.13■■■□□ 2.25
CTCF-203ENST00000566078 GRK6P43250 576 aa29.13■■■□□ 2.25
CTCF-203ENST00000566078 DMTNQ08495 405 aa29.13■■■□□ 2.25
CTCF-203ENST00000566078 STX5Q13190 355 aa29.13■■■□□ 2.25
CTCF-203ENST00000566078 HKDC1Q2TB90 917 aa29.13■■■□□ 2.25
CTCF-203ENST00000566078 WDR74Q6RFH5 385 aaPredicted RBP29.13■■■□□ 2.25
CTCF-203ENST00000566078 CAMKVQ8NCB2 501 aa29.13■■■□□ 2.25
CTCF-203ENST00000566078 IFI44Q8TCB0 444 aa29.13■■■□□ 2.25
CTCF-203ENST00000566078 SPDL1Q96EA4 605 aa29.13■■■□□ 2.25
CTCF-203ENST00000566078 A0A0G2JN53 185 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 AIM2O14862 343 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 TPP2P29144 1249 aaPredicted RBP29.12■■■□□ 2.25
CTCF-203ENST00000566078 SSR2P43308 183 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 ASMTP46597 345 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 CLNS1AP54105 237 aaKnown RBP29.12■■■□□ 2.25
CTCF-203ENST00000566078 MMEL1Q495T6 779 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 VPS26BQ4G0F5 336 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 ZC3H12BQ5HYM0 836 aaKnown RBP29.12■■■□□ 2.25
CTCF-203ENST00000566078 REP15Q6BDI9 236 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 TRIM40Q6P9F5 258 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 KCT2Q8NC54 265 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 GLB1L3Q8NCI6 653 aaPredicted RBP29.12■■■□□ 2.25
CTCF-203ENST00000566078 OR2L5Q8NG80 312 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 GFM2Q969S9 779 aaKnown RBP29.12■■■□□ 2.25
CTCF-203ENST00000566078 KLHL29Q96CT2 875 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 NPAS2Q99743 824 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 NUDT22Q9BRQ3 303 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 LRMDAQ9H2I8 198 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 CLMPQ9H6B4 373 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 FBP2O00757 339 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 HCRTR1O43613 425 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 EIF2S1P05198 315 aaKnown RBP29.12■■■□□ 2.25
CTCF-203ENST00000566078 DUSP3P51452 185 aaPredicted RBP29.12■■■□□ 2.25
CTCF-203ENST00000566078 VSX2P58304 361 aaPredicted RBP29.12■■■□□ 2.25
CTCF-203ENST00000566078 TIGD2Q4W5G0 525 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 SNAP47Q5SQN1 464 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 CCNYL2Q5T2Q4 361 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 OR4C11Q6IEV9 310 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 DGLUCYQ7Z3D6 616 aa29.12■■■□□ 2.25
CTCF-203ENST00000566078 CARFQ8N187 725 aa29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms