RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ELP5Q8TE02 316 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 MTFMTQ96DP5 389 aaKnown RBP15.83■□□□□ 0.12
CLN3-211ENST00000564091 SNF8Q96H20 258 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 HIST1H2AHQ96KK5 128 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 OR4K3Q96R72 315 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 HIST1H2AJQ99878 128 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 TRIM51Q9BSJ1 452 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 HAUS8Q9BT25 410 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 H2AFJQ9BTM1 129 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 SPNS1Q9H2V7 528 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 PCNX1Q96RV3 2341 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 F8P00451 2351 aa15.83■□□□□ 0.12
CLN3-211ENST00000564091 CTAGE15A4D2H0 777 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 BANF1O75531 89 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 TSPAN12O95859 305 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 AHSGP02765 367 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 ALOX12P18054 663 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 PGAM1P18669 254 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 AGAP20933 346 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 BTG2P78543 158 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 CRYMQ14894 314 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 RNFT1Q5M7Z0 435 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 C3P1Q6ZMU1 363 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 CTAGE6Q86UF2 777 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 HORMAD2Q8N7B1 307 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 OR4K1Q8NGD4 311 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 OR56A3Q8NH54 315 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 AGAP11Q8TF27 550 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 PTCHD1Q96NR3 888 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 ARL15Q9NXU5 204 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 SLC17A6Q9P2U8 582 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 ITGB1BP2Q9UKP3 347 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 ZFHX3Q15911 3703 aa15.82■□□□□ 0.12
CLN3-211ENST00000564091 SLC25A12O75746 678 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 CLDN14O95500 239 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 ZNF888P0CJ79 500 aaPredicted RBP15.81■□□□□ 0.12
CLN3-211ENST00000564091 ABOP16442 354 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 TPP2P29144 1249 aaPredicted RBP15.81■□□□□ 0.12
CLN3-211ENST00000564091 HNF4AP41235 474 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 PWP1Q13610 501 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 CYP1B1Q16678 543 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 FGD2Q7Z6J4 655 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 ZNF227Q86WZ6 799 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 DOLPP1Q86YN1 238 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 CHERPQ8IWX8 916 aaKnown RBP15.81■□□□□ 0.12
CLN3-211ENST00000564091 LGI4Q8N135 537 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 CPSF7Q8N684 471 aaKnown RBP15.81■□□□□ 0.12
CLN3-211ENST00000564091 FAM98AQ8NCA5 519 aaKnown RBP15.81■□□□□ 0.12
CLN3-211ENST00000564091 SARGQ9BW04 601 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 GPAMQ9HCL2 828 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 HEATR5BQ9P2D3 2071 aa15.81■□□□□ 0.12
CLN3-211ENST00000564091 CELSR1Q9NYQ6 3014 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 TRBC2A0A5B9 178 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 A8MUA0 341 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 PRMT3O60678 531 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 GUCA1CO95843 209 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 ZNF24P17028 368 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 JAK1P23458 1154 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 MLF1P58340 268 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 KRTAP10-9P60411 292 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 IL2P60568 153 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 RAB8AP61006 207 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 RNASEH2BQ5TBB1 312 aaKnown RBP15.8■□□□□ 0.12
CLN3-211ENST00000564091 DUPD1Q68J44 220 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 PPIL6Q8IXY8 311 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 GHDCQ8N2G8 530 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 UTP15Q8TED0 518 aaKnown RBP15.8■□□□□ 0.12
CLN3-211ENST00000564091 SLC5A11Q8WWX8 675 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 NEIL2Q969S2 332 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 PBKQ96KB5 322 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 TSNARE1Q96NA8 513 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 RHBGQ9H310 441 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 ZFP69BQ9UJL9 534 aa15.8■□□□□ 0.12
CLN3-211ENST00000564091 ADAM10O14672 748 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 NME2P1O60361 137 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 MAOAP21397 527 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 NME2P22392 152 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 SCTRP47872 440 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 CYB561P49447 251 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 RGS1Q08116 209 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 PDAP1Q13442 181 aaKnown RBP15.79■□□□□ 0.12
CLN3-211ENST00000564091 CSHL1Q14406 222 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 MSS51Q4VC12 460 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 IGDCC3Q8IVU1 814 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 LRRC8AQ8IWT6 810 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 GPATCH11Q8N954 259 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 NT5CQ8TCD5 201 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 FBXL8Q96CD0 374 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 KLHL31Q9H511 634 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 NECTIN3Q9NQS3 549 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 IKZF3Q9UKT9 509 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 PPP2R2CQ9Y2T4 447 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 ASB1Q9Y576 335 aa15.79■□□□□ 0.12
CLN3-211ENST00000564091 PABPN1LA6NDY0 278 aaKnown RBP15.78■□□□□ 0.12
CLN3-211ENST00000564091 NRDCO43847 1150 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 PTGER1P34995 402 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 RFC3P40938 356 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 ITGA8P53708 1063 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 AP1S2P56377 157 aa15.78■□□□□ 0.12
CLN3-211ENST00000564091 SKP1P63208 163 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms