RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 MTFMTQ96DP5 389 aaKnown RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 THAP11Q96EK4 314 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 SMIM10Q96HG1 83 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 ATP6V1G3Q96LB4 118 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 LRFN5Q96NI6 719 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 F2RL3Q96RI0 385 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 ZNF382Q96SR6 550 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 MTERF1Q99551 399 aaKnown RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 MESP1Q9BRJ9 268 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 EFCAB11Q9BUY7 163 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 SORBS1Q9BX66 1292 aaKnown RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 CAPS2Q9BXY5 557 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 MS4A8Q9BY19 250 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 C20orf27Q9GZN8 174 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 CTSFQ9UBX1 484 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 NDOR1Q9UHB4 597 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 CROTQ9UKG9 612 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 ZMIZ1Q9ULJ6 1067 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 SSUH2Q9Y2M2 353 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 TIMM22Q9Y584 194 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 LOC400499M0QZD8 3231 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 EML6Q6ZMW3 1958 aa9.3□□□□□ -0.92
CLK3-208ENST00000562626 DSPP15924 2871 aaKnown RBP9.3□□□□□ -0.92
CLK3-208ENST00000562626 MGAQ8IWI9 3026 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 A0A1B0GX78 115 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 LRIT2A6NDA9 550 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 MAGEB17A8MXT2 336 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 H0YIV9 168 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 SGK494L7N484 410 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 SAP18O00422 153 aaKnown RBP9.29□□□□□ -0.92
CLK3-208ENST00000562626 RTCAO00442 366 aaKnown RBP9.29□□□□□ -0.92
CLK3-208ENST00000562626 KLK10O43240 276 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 H2AFYO75367 372 aaKnown RBP9.29□□□□□ -0.92
CLK3-208ENST00000562626 RDH16O75452 317 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 CLEC3AO75596 197 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 CHN1P15882 459 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 BGNP21810 368 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 ALAS2P22557 587 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 CXCR2P25025 360 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 CD82P27701 267 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 SERPINB3P29508 390 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 DLSTP36957 453 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 RPS13P62277 151 aaKnown RBP9.29□□□□□ -0.92
CLK3-208ENST00000562626 LCP2Q13094 533 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 MAP7Q14244 749 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 ADPRMQ3LIE5 342 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 GGTA1PQ4G0N0 100 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 SGO1Q5FBB7 561 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 ATP1A1-AS1Q5TC04 95 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 MED27Q6P2C8 311 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 SCIMPQ6UWF3 145 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 ZNF793Q6ZN11 406 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 GPRIN3Q6ZVF9 776 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 MILR1Q7Z6M3 343 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 KRT78Q8N1N4 520 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 CDYL2Q8N8U2 506 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 CAMKVQ8NCB2 501 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 ZNF248Q8NDW4 579 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 PPP4R1Q8TF05 950 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 CCT6BQ92526 530 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 ATP6V1E2Q96A05 226 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 MS4A6EQ96DS6 147 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 QRFPRQ96P65 431 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 NDC1Q9BTX1 674 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 ZNF717Q9BY31 904 aaPredicted RBP9.29□□□□□ -0.92
CLK3-208ENST00000562626 OR51B5Q9H339 312 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 MID1IP1Q9NPA3 183 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 DMRT3Q9NQL9 472 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 WDR70Q9NW82 654 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 TRPS1Q9UHF7 1281 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 SRPK3Q9UPE1 567 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 LHX6Q9UPM6 363 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 PTGDR2Q9Y5Y4 395 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 NAV2Q8IVL1 2488 aa9.29□□□□□ -0.92
CLK3-208ENST00000562626 NUP214P35658 2090 aaPredicted RBP9.28□□□□□ -0.92
CLK3-208ENST00000562626 EXPH5Q8NEV8 1989 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 OR2W5A6NFC9 320 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 GOLGA6L10A6NI86 522 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 SRRM3A6NNA2 597 aaPredicted RBP9.28□□□□□ -0.92
CLK3-208ENST00000562626 H3BQF6 201 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 MANBAO00462 879 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 TM9SF1O15321 606 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 UGDHO60701 494 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 JRKO75564 520 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 KLF7O75840 302 aaPredicted RBP9.28□□□□□ -0.92
CLK3-208ENST00000562626 KLHL18O94889 574 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 ZWINTO95229 277 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 ONECUT2O95948 504 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 OTCP00480 354 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 TGFB1P01137 390 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 PDYNP01213 254 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 SERPINA6P08185 405 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 FURINP09958 794 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 SLC35G6P0C7Q6 338 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 TCN2P20062 427 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 HPDP32754 393 aaPredicted RBP9.28□□□□□ -0.92
CLK3-208ENST00000562626 ARL1P40616 181 aaPredicted RBP9.28□□□□□ -0.92
CLK3-208ENST00000562626 EMP3P54852 163 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 TLE3Q04726 772 aa9.28□□□□□ -0.92
CLK3-208ENST00000562626 ABHD18Q0P651 414 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms