RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ARGLU1Q9NWB6 273 aaPredicted RBP12.34□□□□□ -0.43
NEDD8-208ENST00000560427 ZNF490Q9ULM2 529 aaPredicted RBP12.34□□□□□ -0.43
NEDD8-208ENST00000560427 PLLPQ9Y342 182 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 MRPS2Q9Y399 296 aaKnown RBP12.34□□□□□ -0.43
NEDD8-208ENST00000560427 ACTL7BQ9Y614 415 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 MRPS18BQ9Y676 258 aaKnown RBP12.34□□□□□ -0.43
NEDD8-208ENST00000560427 MAU2Q9Y6X3 613 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 SPTBP11277 2137 aa12.34□□□□□ -0.43
NEDD8-208ENST00000560427 LAMA5O15230 3695 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 MDC1Q14676 2089 aaKnown RBP12.33□□□□□ -0.44
NEDD8-208ENST00000560427 LRIT2A6NDA9 550 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 LRRC14BA6NHZ5 514 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 FOXO6A8MYZ6 492 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 G3V2L1 256 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 OR7A17O14581 309 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 NKX2-8O15522 239 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 GALR3O60755 368 aaPredicted RBP12.33□□□□□ -0.44
NEDD8-208ENST00000560427 KLHL18O94889 574 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 IGHEP01854 428 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 IL1RNP18510 177 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 ARFIP1P53367 373 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 DNAJB13P59910 316 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 ASPHQ12797 758 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 HYAL2Q12891 473 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 TRAF3Q13114 568 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 TMEM35AQ53FP2 167 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 CEP85LQ5SZL2 805 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 TRIM40Q6P9F5 258 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 MYLK4Q86YV6 388 aaPredicted RBP12.33□□□□□ -0.44
NEDD8-208ENST00000560427 METTL27Q8N6F8 245 aaPredicted RBP12.33□□□□□ -0.44
NEDD8-208ENST00000560427 CCDC63Q8NA47 563 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 MYRIPQ8NFW9 859 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 OR2L5Q8NG80 312 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 OR52B6Q8NGF0 335 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 OR9A4Q8NGU2 314 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 ZCCHC10Q8TBK6 192 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 STT3BQ8TCJ2 826 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 ADAMTS17Q8TE56 1095 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 UTP15Q8TED0 518 aaKnown RBP12.33□□□□□ -0.44
NEDD8-208ENST00000560427 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.33□□□□□ -0.44
NEDD8-208ENST00000560427 CCT6BQ92526 530 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 MIEF2Q96C03 454 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 MS4A6EQ96DS6 147 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 MOCOSQ96EN8 888 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 VPS50Q96JG6 964 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 OR1F2PQ96R84 312 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 ZNF382Q96SR6 550 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 MACROD1Q9BQ69 325 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 ROGDIQ9GZN7 287 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 REXO4Q9GZR2 422 aaKnown RBP12.33□□□□□ -0.44
NEDD8-208ENST00000560427 ZBTB26Q9HCK0 441 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 SEMA3GQ9NS98 782 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 PSD3Q9NYI0 1048 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 TRPC4Q9UBN4 977 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 CTSFQ9UBX1 484 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 PPT2Q9UMR5 302 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 LHX6Q9UPM6 363 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 POLHQ9Y253 713 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 PTRH2Q9Y3E5 179 aaKnown RBP12.33□□□□□ -0.44
NEDD8-208ENST00000560427 NAALAD2Q9Y3Q0 740 aa12.33□□□□□ -0.44
NEDD8-208ENST00000560427 ERVH48-1M5A8F1 160 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 FOXE1O00358 373 aaPredicted RBP12.32□□□□□ -0.44
NEDD8-208ENST00000560427 CNOT3O75175 753 aaKnown RBP12.32□□□□□ -0.44
NEDD8-208ENST00000560427 SUPT7LO94864 414 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 STATHP02808 62 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 ZGLP1P0C6A0 271 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 ZNF888P0CJ79 500 aaPredicted RBP12.32□□□□□ -0.44
NEDD8-208ENST00000560427 SMIM10L1P0DMW3 83 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 CPA3P15088 417 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 MMP11P24347 488 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 ARL1P40616 181 aaPredicted RBP12.32□□□□□ -0.44
NEDD8-208ENST00000560427 TSFMP43897 325 aaKnown RBP12.32□□□□□ -0.44
NEDD8-208ENST00000560427 RPS18P62269 152 aaKnown RBP12.32□□□□□ -0.44
NEDD8-208ENST00000560427 CLCQ05315 142 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 LCP2Q13094 533 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 IL10RAQ13651 578 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 ERV3-1Q14264 604 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 SLC9A5Q14940 896 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 DEFB134Q4QY38 66 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 TNFAIP8L3Q5GJ75 292 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 TOR1AIP1Q5JTV8 583 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 CHSY3Q70JA7 882 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 VN1R5Q7Z5H4 357 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 MILR1Q7Z6M3 343 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 PDSS2Q86YH6 399 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 HOMEZQ8IX15 550 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 ADAMTS18Q8TE60 1221 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 ZNF473Q8WTR7 871 aaKnown RBP12.32□□□□□ -0.44
NEDD8-208ENST00000560427 CMTM7Q96FZ5 175 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 WBP1Q96G27 269 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 CRELD1Q96HD1 420 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 SMIM10Q96HG1 83 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 FAR2Q96K12 515 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 NSUN5Q96P11 429 aaKnown RBP12.32□□□□□ -0.44
NEDD8-208ENST00000560427 KCNC2Q96PR1 638 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 CENPKQ9BS16 269 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 NPLQ9BXD5 320 aaPredicted RBP12.32□□□□□ -0.44
NEDD8-208ENST00000560427 MS4A8Q9BY19 250 aa12.32□□□□□ -0.44
NEDD8-208ENST00000560427 SEMA4BQ9NPR2 832 aaPredicted RBP12.32□□□□□ -0.44
NEDD8-208ENST00000560427 TRPS1Q9UHF7 1281 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms