RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 UTP15Q8TED0 518 aaKnown RBP20.69■□□□□ 0.9
SNX1-210ENST00000560260 KCNE4Q8WWG9 221 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 MR1Q95460 341 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 MTERF1Q99551 399 aaKnown RBP20.69■□□□□ 0.9
SNX1-210ENST00000560260 PAIP2Q9BPZ3 127 aaKnown RBP20.69■□□□□ 0.9
SNX1-210ENST00000560260 FARSBQ9NSD9 589 aaKnown RBP20.69■□□□□ 0.9
SNX1-210ENST00000560260 STK38LQ9Y2H1 464 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 MAU2Q9Y6X3 613 aa20.69■□□□□ 0.9
SNX1-210ENST00000560260 LRIT2A6NDA9 550 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 SH3BGRLO75368 114 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 ETHE1O95571 254 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 SMIM10L1P0DMW3 83 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 F8A1P23610 371 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 EIF2S3P41091 472 aaKnown RBP20.68■□□□□ 0.9
SNX1-210ENST00000560260 RAB8AP61006 207 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 NAA20P61599 178 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 RPS13P62277 151 aaKnown RBP20.68■□□□□ 0.9
SNX1-210ENST00000560260 RCN2Q14257 317 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 CHI3L2Q15782 390 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 MANEAQ5SRI9 462 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 FRG2Q64ET8 278 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 CUZD1Q86UP6 607 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 TMEM151BQ8IW70 566 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 OR9A4Q8NGU2 314 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 MTFMTQ96DP5 389 aaKnown RBP20.68■□□□□ 0.9
SNX1-210ENST00000560260 MS4A6EQ96DS6 147 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 SMIM10Q96HG1 83 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 CNDP1Q96KN2 507 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 FRG2BQ96QU4 278 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 F2RL3Q96RI0 385 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 SLC29A3Q9BZD2 475 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 ZNF395Q9H8N7 513 aaPredicted RBP20.68■□□□□ 0.9
SNX1-210ENST00000560260 NKIRAS1Q9NYS0 192 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 CROTQ9UKG9 612 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 PADI1Q9ULC6 663 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 TIMM22Q9Y584 194 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 SLC22A7Q9Y694 548 aa20.68■□□□□ 0.9
SNX1-210ENST00000560260 A0A0G2JN53 185 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 MAGEB17A8MXT2 336 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 CNOT3O75175 753 aaKnown RBP20.67■□□□□ 0.9
SNX1-210ENST00000560260 LYPLA1O75608 230 aaPredicted RBP20.67■□□□□ 0.9
SNX1-210ENST00000560260 ONECUT2O95948 504 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 TGFB1P01137 390 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 SERPINE1P05121 402 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 SERPINB1P30740 379 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 PIK3CBP42338 1070 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 FOXL2P58012 376 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 ABHD18Q0P651 414 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 FAM53BQ14153 422 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 NDUFA9Q16795 377 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 NKAIN1Q4KMZ8 207 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 ARL13AQ5H913 290 aaPredicted RBP20.67■□□□□ 0.9
SNX1-210ENST00000560260 UBE3DQ7Z6J8 389 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 AMER3Q8N944 861 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 KDF1Q8NAX2 398 aaPredicted RBP20.67■□□□□ 0.9
SNX1-210ENST00000560260 GAL3ST3Q96A11 431 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 REPS1Q96D71 796 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 MAGEB10Q96LZ2 347 aaPredicted RBP20.67■□□□□ 0.9
SNX1-210ENST00000560260 HBEGFQ99075 208 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 TRMOQ9BU70 441 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 OR51B5Q9H339 312 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 SEC16AO15027 2179 aa20.67■□□□□ 0.9
SNX1-210ENST00000560260 ACACAQ13085 2346 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 SCN3AQ9NY46 2000 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 TMEM8BA6NDV4 472 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 ZNF860A6NHJ4 632 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 H3BQF6 201 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 MANBAO00462 879 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 DYNC1I1O14576 645 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 ITM2AO43736 263 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 DNAJB6O75190 326 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 KLHL18O94889 574 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 ENO1P06733 434 aaKnown RBP20.66■□□□□ 0.9
SNX1-210ENST00000560260 ALOX12P18054 663 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 WT1P19544 449 aaPredicted RBP20.66■□□□□ 0.9
SNX1-210ENST00000560260 DCDP81605 110 aaKnown RBP20.66■□□□□ 0.9
SNX1-210ENST00000560260 MAT1AQ00266 395 aaKnown RBP20.66■□□□□ 0.9
SNX1-210ENST00000560260 SYT16Q17RD7 645 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 SGO1Q5FBB7 561 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 TTC19Q6DKK2 380 aaPredicted RBP20.66■□□□□ 0.9
SNX1-210ENST00000560260 MVB12AQ96EY5 273 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 C20orf27Q9GZN8 174 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 NAALAD2Q9Y3Q0 740 aa20.66■□□□□ 0.9
SNX1-210ENST00000560260 TMEM233B4DJY2 109 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 SGK494L7N484 410 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 SAP18O00422 153 aaKnown RBP20.65■□□□□ 0.9
SNX1-210ENST00000560260 ERI3O43414 337 aaKnown RBP20.65■□□□□ 0.9
SNX1-210ENST00000560260 ATP8B1O43520 1251 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 GALR3O60755 368 aaPredicted RBP20.65■□□□□ 0.9
SNX1-210ENST00000560260 RDH16O75452 317 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 NSA2O95478 260 aaKnown RBP20.65■□□□□ 0.9
SNX1-210ENST00000560260 PDYNP01213 254 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 KLK3P07288 261 aaPredicted RBP20.65■□□□□ 0.9
SNX1-210ENST00000560260 CCNYL3P0C7X3 344 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 SERPINB3P29508 390 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 STXBP1P61764 594 aaKnown RBP20.65■□□□□ 0.9
SNX1-210ENST00000560260 PPP2R2AP63151 447 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 DEFB134Q4QY38 66 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 ARHGAP40Q5TG30 622 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 KHDRBS2Q5VWX1 349 aaKnown RBP20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms