RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CRYBA2P53672 197 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 CACNG1Q06432 222 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 KNOP1Q1ED39 458 aaKnown RBP3.11□□□□□ -1.91
VPS13C-208ENST00000559119 ZRANB3Q5FWF4 1079 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 SPANXN4Q5MJ08 99 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 CAMKMTQ7Z624 323 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 CCDC185Q8N715 623 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 SYT2Q8N9I0 419 aaPredicted RBP3.11□□□□□ -1.91
VPS13C-208ENST00000559119 NSUN4Q96CB9 384 aaKnown RBP3.11□□□□□ -1.91
VPS13C-208ENST00000559119 NUS1Q96E22 293 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 MUS81Q96NY9 551 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 ZHX3Q9H4I2 956 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 C3orf14Q9HBI5 128 aa3.11□□□□□ -1.91
VPS13C-208ENST00000559119 CPSF2Q9P2I0 782 aaKnown RBP3.11□□□□□ -1.91
VPS13C-208ENST00000559119 EEA1Q15075 1411 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 SPATA31D1Q6ZQQ2 1576 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 C17orf105B2RV13 164 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 E7ENQ6 273 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 AP5Z1O43299 807 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 KBTBD11O94819 623 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 SEMA4FO95754 770 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 ABCB1P08183 1280 aaPredicted RBP3.1□□□□□ -1.91
VPS13C-208ENST00000559119 GIG44P09565 113 aaPredicted RBP3.1□□□□□ -1.91
VPS13C-208ENST00000559119 CYP11B2P19099 503 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 NAAAQ02083 359 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 RBBP7Q16576 425 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 POM121L1PQ3SYA9 428 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 SLC22A6Q4U2R8 563 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 MUC21Q5SSG8 566 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 PAMR1Q6UXH9 720 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 CCDC63Q8NA47 563 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 SLC4A11Q8NBS3 891 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 LURAP1Q96LR2 239 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 RUNDC3BQ96NL0 473 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 SDF4Q9BRK5 362 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 PDE7BQ9NP56 450 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 DEPPQ9NTK1 212 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 TBC1D22BQ9NU19 505 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 TMEM5Q9Y2B1 443 aa3.1□□□□□ -1.91
VPS13C-208ENST00000559119 MRPL11Q9Y3B7 192 aaKnown RBP3.1□□□□□ -1.91
VPS13C-208ENST00000559119 RSF1Q96T23 1441 aaPredicted RBP3.1□□□□□ -1.91
VPS13C-208ENST00000559119 RB1CC1Q8TDY2 1594 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 EDDM13A0A1B0GTR0 161 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 HMGB1P1B2RPK0 211 aaPredicted RBP3.09□□□□□ -1.91
VPS13C-208ENST00000559119 TCP10L2B9ZVM9 353 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 IGKV3-11P04433 115 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 ZNF32P17041 273 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 CAPN3P20807 821 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 AZGP1P25311 298 aaKnown RBP3.09□□□□□ -1.91
VPS13C-208ENST00000559119 STK4Q13043 487 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 IL11RAQ14626 422 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 MACC1Q6ZN28 852 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 IQCHQ86VS3 1027 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 DND1Q8IYX4 353 aaKnown RBP3.09□□□□□ -1.91
VPS13C-208ENST00000559119 BANPQ8N9N5 519 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 FLVCR1-AS1Q8TAF5 88 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 GCNAQ96QF7 691 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 GPR88Q9GZN0 384 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 EXOC1Q9NV70 894 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 PKD2L2Q9NZM6 624 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 DHRS4-AS1Q9P1J3 65 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 TBC1D29Q9UFV1 150 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 SLC12A6Q9UHW9 1150 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 CENPJQ9HC77 1338 aaPredicted RBP3.09□□□□□ -1.91
VPS13C-208ENST00000559119 SALL1Q9NSC2 1324 aa3.09□□□□□ -1.91
VPS13C-208ENST00000559119 SIGLEC5O15389 551 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 ZNF253O75346 499 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 CD59P13987 128 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 ALOX12P18054 663 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 SPRP35270 261 aaPredicted RBP3.08□□□□□ -1.92
VPS13C-208ENST00000559119 HSD17B3P37058 310 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 ANP32AP39687 249 aaKnown RBP3.08□□□□□ -1.92
VPS13C-208ENST00000559119 FEN1P39748 380 aaKnown RBP3.08□□□□□ -1.92
VPS13C-208ENST00000559119 CLDN17P56750 224 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 BTG1P62324 171 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 RALGDSQ12967 914 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 LTB4RQ15722 352 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 PTGISQ16647 500 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 NAA16Q6N069 864 aaPredicted RBP3.08□□□□□ -1.92
VPS13C-208ENST00000559119 TTC27Q6P3X3 843 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 C1orf122Q6ZSJ8 110 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 CENPVQ7Z7K6 275 aaPredicted RBP3.08□□□□□ -1.92
VPS13C-208ENST00000559119 ADGRD2Q7Z7M1 963 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 TC2NQ8N9U0 490 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 OR6T1Q8NGN1 323 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 SEPT1Q8WYJ6 367 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 PYCR2Q96C36 320 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 Q9UF83 564 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 RSPH14Q9UHP6 348 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 MGAT4AQ9UM21 535 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 SPATA2Q9UM82 520 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 DHX57Q6P158 1386 aaKnown RBP3.08□□□□□ -1.92
VPS13C-208ENST00000559119 FER1L5A0AVI2 2057 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 CEP162Q5TB80 1403 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 CUX2O14529 1486 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 ABCC9O60706 1549 aa3.08□□□□□ -1.92
VPS13C-208ENST00000559119 KLF18A0A0U1RQI7 1052 aa3.07□□□□□ -1.92
VPS13C-208ENST00000559119 CREB3O43889 395 aa3.07□□□□□ -1.92
VPS13C-208ENST00000559119 SRPX2O60687 465 aaPredicted RBP3.07□□□□□ -1.92
VPS13C-208ENST00000559119 RPL9P32969 192 aaKnown RBP3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms