RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	ERF	P50548	548 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	AFF3	P51826	1226 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	MAPK12	P53778	367 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	WNT3	P56703	355 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	TAS2R50	P59544	299 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	TRA2B	P62995	288 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	HHEX	Q03014	270 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	RELA	Q04206	551 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	TGM3	Q08188	693 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	C2orf80	Q0P641	193 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	MAP7	Q14244	749 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	CWF19L1	Q69YN2	538 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	FAM71E1	Q6IPT2	247 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	LCN8	Q6JVE9	175 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	C11orf74	Q86VG3	221 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	OOSP2	Q86WS3	158 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	PLD3	Q8IV08	490 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	AQP12A	Q8IXF9	295 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	FAM20C	Q8IXL6	584 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	NATD1	Q8N6N6	113 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	SRFBP1	Q8NEF9	429 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	OR10G6	Q8NH81	332 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	FLVCR1-AS1	Q8TAF5	88 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	LMX1A	Q8TE12	382 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	PATE1	Q8WXA2	126 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	PPCDC	Q96CD2	204 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	THAP11	Q96EK4	314 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	CCDC115	Q96NT0	180 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	ECSIT	Q9BQ95	431 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	THUMPD3	Q9BV44	507 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	ZNF717	Q9BY31	904 aa	Predicted RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	UCK1	Q9HA47	277 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	PCDHB3	Q9Y5E6	796 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	KLK4	Q9Y5K2	254 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	SNX13	Q9Y5W8	968 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	OR2A25	A4D2G3	310 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	LRIT2	A6NDA9	550 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529		B4DGG1	531 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	RNASET2	O00584	256 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	NVL	O15381	856 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	BCAT2	O15382	392 aa	Predicted RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	TBX19	O60806	448 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	SCN2B	O60939	215 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	BAG2	O95816	211 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	SERPIND1	P05546	499 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	FURIN	P09958	794 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	PIM1	P11309	404 aa	Predicted RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	HOXB9	P17482	250 aa	Predicted RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	POLR2C	P19387	275 aa	Predicted RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	PTDSS1	P48651	473 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	SESN3	P58005	492 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	MTPN	P58546	118 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	MRPS22	P82650	360 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	RHD	Q02161	417 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	TEAD4	Q15561	434 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	FXN	Q16595	210 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	ADPRM	Q3LIE5	342 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	TJAP1	Q5JTD0	557 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	IRAK1BP1	Q5VVH5	260 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	OR4C11	Q6IEV9	310 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	ARMC6	Q6NXE6	501 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	KLHL35	Q6PF15	583 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	SPESP1	Q6UW49	350 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	WDR5B	Q86VZ2	330 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	ANKRD46	Q86W74	232 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	IFNE	Q86WN2	208 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	PROSER1	Q86XN7	944 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	MSRB3	Q8IXL7	192 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	DUS3L	Q96G46	650 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	ZNF764	Q96H86	408 aa	Predicted RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	PANX1	Q96RD7	426 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	INPP5K	Q9BT40	448 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	DDX31	Q9H8H2	851 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	PRMT8	Q9NR22	394 aa	Predicted RBP	11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	SLC25A37	Q9NYZ2	338 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	SH3BP4	Q9P0V3	963 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	MAGEL2	Q9UJ55	1249 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	NEUROG3	Q9Y4Z2	214 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	PCDHB14	Q9Y5E9	798 aa		11.92	□□□□□ -0.5
SHMT2-233	ENST00000557529	FANCM	Q8IYD8	2048 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	TCRBV3S1	A0A5B6	114 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	EVPLL	A8MZ36	301 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	LMO7DN	F2Z398	122 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529		H3BNX3	289 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	ARPC2	O15144	300 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	AQP9	O43315	295 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	GMNN	O75496	209 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	KLHL18	O94889	574 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	EPN2	O95208	641 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	GBA	P04062	536 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	ANXA6	P08133	673 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	IL3	P08700	152 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	ZCCHC18	P0CG32	403 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	PPIB	P23284	216 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	PTPN6	P29350	595 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	VHL	P40337	213 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	SSR2	P43308	183 aa		11.91	□□□□□ -0.5
SHMT2-233	ENST00000557529	TSFM	P43897	325 aa	Known RBP	11.91	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms