RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 LCHNA4D1U4 455 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 SOWAHBA6NEL2 793 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 LY86O95711 162 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 GP1BAP07359 652 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 CNPP09543 421 aaKnown RBP13.33□□□□□ -0.27
SHMT2-226ENST00000556825 MIPP30301 263 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 ASPAP45381 313 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 CRISP3P54108 245 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 CDH6P55285 790 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 KCNJ10P78508 379 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 COTL1Q14019 142 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 AARDQ4LEZ3 155 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 ASPRV1Q53RT3 343 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 AVPI1Q5T686 147 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 MLIPQ5VWP3 458 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 LRRC8DQ7L1W4 858 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 CDKL3Q8IVW4 592 aaPredicted RBP13.33□□□□□ -0.27
SHMT2-226ENST00000556825 ADGRF3Q8IZF5 1079 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 ZNF454Q8N9F8 522 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 TTC29Q8NA56 475 aaPredicted RBP13.33□□□□□ -0.27
SHMT2-226ENST00000556825 C11orf65Q8NCR3 313 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 SLC44A5Q8NCS7 719 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 METTL6Q8TCB7 284 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 CRYGNQ8WXF5 182 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 MSLNLQ96KJ4 702 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 OMDQ99983 421 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 MSTO1Q9BUK6 570 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 GABARAPL1Q9H0R8 117 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 AGO3Q9H9G7 860 aaKnown RBP13.33□□□□□ -0.27
SHMT2-226ENST00000556825 ARHGAP28Q9P2N2 729 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 EVLQ9UI08 416 aaPredicted RBP13.33□□□□□ -0.27
SHMT2-226ENST00000556825 TBX20Q9UMR3 447 aa13.33□□□□□ -0.27
SHMT2-226ENST00000556825 EP400Q96L91 3159 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 RHPN2P1A8MT19 583 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 UBE2CO00762 179 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 GSTA4O15217 222 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 MSH4O15457 936 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 LZTS3O60299 673 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-226ENST00000556825 PRAMEF1O95521 474 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 APBA3O96018 575 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 PTHP01270 115 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 CYP17A1P05093 508 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 PRKAR2AP13861 404 aaKnown RBP13.33□□□□□ -0.28
SHMT2-226ENST00000556825 CALCRP30988 508 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 SLC1A3P43003 542 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 MAZP56270 477 aaKnown RBP13.33□□□□□ -0.28
SHMT2-226ENST00000556825 TSPAN5P62079 268 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 ECH1Q13011 328 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 ILKQ13418 452 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 RBMS2Q15434 407 aaKnown RBP13.33□□□□□ -0.28
SHMT2-226ENST00000556825 PAGE3Q5JUK9 113 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 HECTD3Q5T447 861 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 ZNF367Q7RTV3 350 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 RNASE11Q8TAA1 199 aaKnown RBP13.33□□□□□ -0.28
SHMT2-226ENST00000556825 JOSD2Q8TAC2 188 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 POF1BQ8WVV4 589 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 UBE2FQ969M7 185 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 OTULINQ96BN8 352 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 SCRN2Q96FV2 425 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 HTATIP2Q9BUP3 242 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 POLR1EQ9GZS1 481 aaKnown RBP13.33□□□□□ -0.28
SHMT2-226ENST00000556825 GORASP2Q9H8Y8 452 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 CRLF2Q9HC73 371 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 SDR39U1Q9NRG7 319 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-226ENST00000556825 SNTG1Q9NSN8 517 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 MED11Q9P086 117 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 GHRLQ9UBU3 117 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 AFF4Q9UHB7 1163 aaKnown RBP13.33□□□□□ -0.28
SHMT2-226ENST00000556825 SCP2D1Q9UJQ7 156 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 CNTN6Q9UQ52 1028 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 CRYL1Q9Y2S2 319 aa13.33□□□□□ -0.28
SHMT2-226ENST00000556825 DNMT3AQ9Y6K1 912 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-226ENST00000556825 ASPDHA6ND91 283 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 KIAA0355O15063 1070 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 EEDO75530 441 aaKnown RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 F7P08709 466 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 TIMP2P16035 220 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 PBLDP30039 288 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 SSTR4P31391 388 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 NNMTP40261 264 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 AP1S1P61966 158 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 ZNF33AQ06730 810 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 CYB5R2Q6BCY4 276 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 SCYL2Q6P3W7 929 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 GCNT7Q6ZNI0 430 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 SERINC5Q86VE9 423 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 L3MBTL4Q8NA19 623 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 ZNF527Q8NB42 609 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 OR4F6Q8NGB9 312 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 COQ8AQ8NI60 647 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 GGHQ92820 318 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 ISG20Q96AZ6 181 aaKnown RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 C14orf144Q96I85 54 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 PRMT6Q96LA8 375 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 SARGQ9BW04 601 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 RNF32Q9H0A6 362 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 ING1Q9UK53 422 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 BACE2Q9Y5Z0 518 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 A0A1W2PQL4 384 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 C9orf170A2RU37 121 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms