RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 POPDC3Q9HBV1 291 aa10.03□□□□□ -0.8
SHMT2-215ENST00000554656 MRPS30Q9NP92 439 aaKnown RBP10.03□□□□□ -0.8
SHMT2-215ENST00000554656 SNX15Q9NRS6 342 aa10.03□□□□□ -0.8
SHMT2-215ENST00000554656 PLA2G3Q9NZ20 509 aa10.03□□□□□ -0.8
SHMT2-215ENST00000554656 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.03□□□□□ -0.8
SHMT2-215ENST00000554656 SLC17A6Q9P2U8 582 aa10.03□□□□□ -0.8
SHMT2-215ENST00000554656 TAC3Q9UHF0 121 aa10.03□□□□□ -0.8
SHMT2-215ENST00000554656 MID2Q9UJV3 735 aa10.03□□□□□ -0.8
SHMT2-215ENST00000554656 MTO1Q9Y2Z2 717 aaKnown RBP10.03□□□□□ -0.8
SHMT2-215ENST00000554656 PLLPQ9Y342 182 aa10.03□□□□□ -0.8
SHMT2-215ENST00000554656 MRPS2Q9Y399 296 aaKnown RBP10.03□□□□□ -0.8
SHMT2-215ENST00000554656 COMMD10Q9Y6G5 202 aa10.03□□□□□ -0.8
SHMT2-215ENST00000554656 CSMD1Q96PZ7 3565 aa10.03□□□□□ -0.8
SHMT2-215ENST00000554656 PCNX1Q96RV3 2341 aa10.02□□□□□ -0.8
SHMT2-215ENST00000554656 LOC102723996A0A087X1L8 192 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 IGHV1-45A0A0A0MS14 117 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 FAM95CA0A1B0GW59 222 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 GMNCA6NCL1 334 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 FOXO6A8MYZ6 492 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 HAT1O14929 419 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 BIRC5O15392 142 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 ZG16O60844 167 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 F10P00742 488 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 STATHP02808 62 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 STSP08842 583 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 ITGAMP11215 1152 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 PRF1P14222 555 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 PKMP14618 531 aaKnown RBP10.02□□□□□ -0.81
SHMT2-215ENST00000554656 GABRB3P28472 473 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 RPA3P35244 121 aaPredicted RBP10.02□□□□□ -0.81
SHMT2-215ENST00000554656 SLC26A3P40879 764 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 PNLIPRP1P54315 467 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 EMP2P54851 167 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 WDR4P57081 412 aaKnown RBP10.02□□□□□ -0.81
SHMT2-215ENST00000554656 KCNK10P57789 538 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 SRSF11Q05519 484 aaKnown RBP10.02□□□□□ -0.81
SHMT2-215ENST00000554656 CTBP1Q13363 440 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 TSTA3Q13630 321 aaPredicted RBP10.02□□□□□ -0.81
SHMT2-215ENST00000554656 PCOLCEQ15113 449 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 PDK4Q16654 411 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 CCDC153Q494R4 210 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 ICE2Q659A1 982 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 FAM45BPQ6NSW5 357 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 RPUSD3Q6P087 351 aaKnown RBP10.02□□□□□ -0.81
SHMT2-215ENST00000554656 TICAM1Q8IUC6 712 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 PLD3Q8IV08 490 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 ZC3H7AQ8IWR0 971 aaKnown RBP10.02□□□□□ -0.81
SHMT2-215ENST00000554656 TRIM42Q8IWZ5 723 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 KBTBD2Q8IY47 623 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 LRRC56Q8IYG6 542 aaPredicted RBP10.02□□□□□ -0.81
SHMT2-215ENST00000554656 RAB42Q8N4Z0 105 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 RAB3IL1Q8TBN0 382 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 FAM45AQ8TCE6 357 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 MAGEC3Q8TD91 643 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 ZNF480Q8WV37 535 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 PTGFRNQ9P2B2 879 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 TRPC4Q9UBN4 977 aa10.02□□□□□ -0.81
SHMT2-215ENST00000554656 A0A087X1B8 175 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 A0A0A6YYC8 382 aaPredicted RBP10.01□□□□□ -0.81
SHMT2-215ENST00000554656 NSG1A0A0A6YYJ2 146 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 E7ENX8 843 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 H3BMM5 538 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 I3L1I5 382 aaPredicted RBP10.01□□□□□ -0.81
SHMT2-215ENST00000554656 GOLGA8RI6L899 631 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 JRKO75564 520 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 WISP2O76076 250 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 CATP04040 527 aaKnown RBP10.01□□□□□ -0.81
SHMT2-215ENST00000554656 SERPINA7P05543 415 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 C2P06681 752 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 STMN1P16949 149 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 CHRM3P20309 590 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 TNFSF10P50591 281 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 SLC12A2P55011 1212 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 RAB10P61026 200 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 MPP1Q00013 466 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 MAT1AQ00266 395 aaKnown RBP10.01□□□□□ -0.81
SHMT2-215ENST00000554656 TAP2Q03519 686 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 PRDX1Q06830 199 aaKnown RBP10.01□□□□□ -0.81
SHMT2-215ENST00000554656 USP10Q14694 798 aaKnown RBP10.01□□□□□ -0.81
SHMT2-215ENST00000554656 ARHGAP19Q14CB8 494 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 NAA25Q14CX7 972 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 ZRSR2Q15696 482 aaKnown RBP10.01□□□□□ -0.81
SHMT2-215ENST00000554656 TSNAXIP1Q2TAA8 658 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 TMEM205Q6UW68 189 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 FAM180AQ6UWF9 173 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 CYHR1Q6ZMK1 362 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 NDUFAF7Q7L592 441 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 PRSS41Q7RTY9 318 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 VN1R4Q7Z5H5 301 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 BCORP1Q8N888 145 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 OR1N1Q8NGS0 311 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 ASB11Q8WXH4 323 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 MVB12AQ96EY5 273 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 MMABQ96EY8 250 aaPredicted RBP10.01□□□□□ -0.81
SHMT2-215ENST00000554656 CHMP6Q96FZ7 201 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 TSNARE1Q96NA8 513 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 ZNF317Q96PQ6 595 aaPredicted RBP10.01□□□□□ -0.81
SHMT2-215ENST00000554656 TGIF2Q9GZN2 237 aa10.01□□□□□ -0.81
SHMT2-215ENST00000554656 NSRP1Q9H0G5 558 aaKnown RBP10.01□□□□□ -0.81
SHMT2-215ENST00000554656 FBXO6Q9NRD1 293 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms