RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TPGS1Q6ZTW0 290 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 CBLL1Q75N03 491 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 CAMKK1Q8N5S9 505 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SPERTQ8NA61 448 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SYT14Q8NB59 555 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 RAET1EQ8TD07 263 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 DEDD2Q8WXF8 326 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 KCNJ9Q92806 393 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 C1orf74Q96LT6 269 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 COL21A1Q96P44 957 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 PANX1Q96RD7 426 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 RSPO3Q9BXY4 272 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 P2RY12Q9H244 342 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SLA2Q9H6Q3 261 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 NMRK2Q9NPI5 230 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 PCDH10Q9P2E7 1040 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 CRLS1Q9UJA2 301 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 MAN2B2Q9Y2E5 1009 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 ZFP37Q9Y6Q3 630 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 IGLV3-10A0A075B6K4 115 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TMCC2O75069 709 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 CKMP06732 381 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 YES1P07947 543 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 HBQ1P09105 142 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 LAMP1P11279 417 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF250P15622 560 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 MYL9P24844 172 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SLC6A4P31645 630 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 EVI2BP34910 448 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 GPC1P35052 558 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 ATP5C1P36542 298 aaKnown RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 OPRD1P41143 372 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 CRYBB2P43320 205 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 CDH12P55289 794 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 CLDN8P56748 225 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 PSPHP78330 225 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 IL10RBQ08334 325 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 GAB1Q13480 694 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 GANABQ14697 944 aaKnown RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 GLYR1Q49A26 553 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 COX20Q5RI15 118 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 ARMC12Q5T9G4 340 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 RNF219Q5W0B1 726 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 DPY19L3Q6ZPD9 716 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 RNF180Q86T96 592 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TMEM132CQ8N3T6 1108 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 WDR36Q8NI36 951 aaKnown RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SOCS4Q8WXH5 440 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 USP7Q93009 1102 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TBC1D20Q96BZ9 403 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 COQ7Q99807 217 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SH3GL1Q99961 368 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 CD244Q9BZW8 370 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 PLCXD1Q9NUJ7 323 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TMEM45AQ9NWC5 275 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 NUDT4Q9NZJ9 180 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TRAPPC4Q9Y296 219 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TLR6Q9Y2C9 796 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 DHRS7Q9Y394 339 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 PCDHGB2Q9Y5G2 931 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TNPO3Q9Y5L0 923 aaKnown RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 GAPDHSO14556 408 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 FPGTO14772 594 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TEX28O15482 410 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SH3BP5O60239 455 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 PLOD3O60568 738 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 PQBP1O60828 265 aaKnown RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 APOL3O95236 402 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 MSL3P1P0C860 447 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 HOXB8P17481 243 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TACR2P21452 398 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 APEX1P27695 318 aaKnown RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 CCND3P30281 292 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 PTGES3Q15185 160 aaKnown RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TAF1AQ15573 450 aaPredicted RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TATDN3Q17R31 274 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 EXOC3L2Q2M3D2 409 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 BTBD16Q32M84 506 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 POM121L1PQ3SYA9 428 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 FAM180BQ6P0A1 224 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 TMPRSS11AQ6ZMR5 421 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 EIF3MQ7L2H7 374 aaKnown RBP4.67□□□□□ -1.66
LIMA1-214ENST00000552783 OTOP2Q7RTS6 562 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 GPR155Q7Z3F1 870 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF605Q86T29 641 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 BBS7Q8IWZ6 715 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 HS6ST3Q8IZP7 471 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 NAGSQ8N159 534 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 FAM109AQ8N4B1 249 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SPPL2AQ8TCT8 520 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 FCGR1BQ92637 280 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 MYDGFQ969H8 173 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 SUSD3Q96L08 255 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 RIPOR3Q96MK2 946 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 VPS35Q96QK1 796 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 COPS8Q99627 209 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 DHRS9Q9BPW9 319 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 CCDC32Q9BV29 185 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 GPR62Q9BZJ7 368 aa4.67□□□□□ -1.66
LIMA1-214ENST00000552783 B3GNT4Q9C0J1 378 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms