RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 C1orf189Q5VU69 101 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 RHBDD2Q6NTF9 364 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 PRSS41Q7RTY9 318 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 CLYBLQ8N0X4 340 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 CMTM7Q96FZ5 175 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 B3GNT4Q9C0J1 378 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 ILKAPQ9H0C8 392 aaPredicted RBP20.16■□□□□ 0.82
VPS29-206ENST00000549578 TXLNGQ9NUQ3 528 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 NDOR1Q9UHB4 597 aa20.16■□□□□ 0.82
VPS29-206ENST00000549578 SDK2Q58EX2 2172 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 FOXE1O00358 373 aaPredicted RBP20.15■□□□□ 0.82
VPS29-206ENST00000549578 SAP18O00422 153 aaKnown RBP20.15■□□□□ 0.82
VPS29-206ENST00000549578 B3GALT4O96024 378 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 EMP3P54852 163 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 RAB8AP61006 207 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 STXBP1P61764 594 aaKnown RBP20.15■□□□□ 0.82
VPS29-206ENST00000549578 OCRLQ01968 901 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 C10orf62Q5T681 223 aaPredicted RBP20.15■□□□□ 0.82
VPS29-206ENST00000549578 YOD1Q5VVQ6 348 aaPredicted RBP20.15■□□□□ 0.82
VPS29-206ENST00000549578 GARNL3Q5VVW2 1013 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 METTL27Q8N6F8 245 aaPredicted RBP20.15■□□□□ 0.82
VPS29-206ENST00000549578 UTP15Q8TED0 518 aaKnown RBP20.15■□□□□ 0.82
VPS29-206ENST00000549578 MS4A6EQ96DS6 147 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 MAGEB18Q96M61 343 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 REXO4Q9GZR2 422 aaKnown RBP20.15■□□□□ 0.82
VPS29-206ENST00000549578 THSD1Q9NS62 852 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 ANGPTL2Q9UKU9 493 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 DNAJC15Q9Y5T4 150 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 PTGDR2Q9Y5Y4 395 aa20.15■□□□□ 0.82
VPS29-206ENST00000549578 A0A0G2JN53 185 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 DSCR3O14972 297 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 ERI3O43414 337 aaKnown RBP20.14■□□□□ 0.81
VPS29-206ENST00000549578 SNUPNO95149 360 aaKnown RBP20.14■□□□□ 0.81
VPS29-206ENST00000549578 IL1RNP18510 177 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 PLA2G16P53816 162 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 SHC2P98077 582 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 GUCY1A3Q02108 690 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 NDUFA9Q16795 377 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 ADPRMQ3LIE5 342 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 UGT3A2Q3SY77 523 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 KHDRBS2Q5VWX1 349 aaKnown RBP20.14■□□□□ 0.81
VPS29-206ENST00000549578 ZFAND4Q86XD8 727 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 GALNT6Q8NCL4 622 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 SPRY4Q9C004 299 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 SLCO1B3Q9NPD5 702 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 PNPOQ9NVS9 261 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 HAO1Q9UJM8 370 aa20.14■□□□□ 0.81
VPS29-206ENST00000549578 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.14■□□□□ 0.81
VPS29-206ENST00000549578 TMEM184BQ9Y519 407 aaPredicted RBP20.14■□□□□ 0.81
VPS29-206ENST00000549578 FREM2Q5SZK8 3169 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 FER1L5A0AVI2 2057 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 ASPMQ8IZT6 3477 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 A0A0A6YYC8 382 aaPredicted RBP20.13■□□□□ 0.81
VPS29-206ENST00000549578 A0A1B0GX78 115 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 I3L1I5 382 aaPredicted RBP20.13■□□□□ 0.81
VPS29-206ENST00000549578 FOXS1O43638 330 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 DLGAP3O95886 979 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 HBQ1P09105 142 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 PTX3P26022 381 aaPredicted RBP20.13■□□□□ 0.81
VPS29-206ENST00000549578 RORAP35398 523 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 DEFB134Q4QY38 66 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 DEPDC1Q5TB30 811 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 CHSY3Q70JA7 882 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 ABHD13Q7L211 337 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 ERMP1Q7Z2K6 904 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 TIPARPQ7Z3E1 657 aaKnown RBP20.13■□□□□ 0.81
VPS29-206ENST00000549578 OR9A4Q8NGU2 314 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 TWIST2Q8WVJ9 160 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 GAL3ST3Q96A11 431 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 C17orf62Q9BQA9 187 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 ACPTQ9BZG2 426 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 TUBB1Q9H4B7 451 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 SLC12A4Q9UP95 1085 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 SLC22A7Q9Y694 548 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 SCN3AQ9NY46 2000 aa20.13■□□□□ 0.81
VPS29-206ENST00000549578 URADA6NGE7 173 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 SKAP2O75563 359 aaPredicted RBP20.12■□□□□ 0.81
VPS29-206ENST00000549578 CHEK2O96017 543 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 SMIM10L1P0DMW3 83 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 ALOX12P18054 663 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 RPL14P50914 215 aaKnown RBP20.12■□□□□ 0.81
VPS29-206ENST00000549578 HMGCS1Q01581 520 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 CSTF3Q12996 717 aaKnown RBP20.12■□□□□ 0.81
VPS29-206ENST00000549578 FAM53BQ14153 422 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 UBE3DQ7Z6J8 389 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 PDSS2Q86YH6 399 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 AFAP1L2Q8N4X5 818 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 OR2L5Q8NG80 312 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 ZDHHC19Q8WVZ1 309 aaPredicted RBP20.12■□□□□ 0.81
VPS29-206ENST00000549578 SMIM10Q96HG1 83 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 GBP5Q96PP8 586 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 SERPINI1Q99574 410 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 AKIRIN1Q9H9L7 192 aaPredicted RBP20.12■□□□□ 0.81
VPS29-206ENST00000549578 BRF2Q9HAW0 419 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 ANKHQ9HCJ1 492 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 MARCOQ9UEW3 520 aaPredicted RBP20.12■□□□□ 0.81
VPS29-206ENST00000549578 PPT2Q9UMR5 302 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 NAALAD2Q9Y3Q0 740 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 MAU2Q9Y6X3 613 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 SEC16AO15027 2179 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms